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Cluster: Rep_1001_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_20 Rep_1001_c_20_1 1021 2631 + 3.A.1.5.39
TC Rep_1001_c_20 Rep_1001_c_20_2 2835 3854 + 3.A.1.5.39
TC Rep_1001_c_20 Rep_1001_c_20_3 3864 4766 + 3.A.1.5.39
TC Rep_1001_c_20 Rep_1001_c_20_4 4779 5765 + 3.A.1.5.27
TC Rep_1001_c_20 Rep_1001_c_20_5 5755 6783 + 3.A.1.5.27
pfam Rep_1001_c_20 Rep_1001_c_20_6 7616 8203 + CBP_BcsO
STP Rep_1001_c_20 Rep_1001_c_20_7 8194 8997 + CbiA
CAZyme Rep_1001_c_20 Rep_1001_c_20_8 9052 11157 + GT2
TC Rep_1001_c_20 Rep_1001_c_20_9 11154 14033 + 4.D.3.1.6
TC Rep_1001_c_20 Rep_1001_c_20_10 14045 17851 + 1.B.55.3.1
pfam Rep_1001_c_20 Rep_1001_c_20_11 17851 18297 + Cellsynth_D
CAZyme Rep_1001_c_20 Rep_1001_c_20_12 18307 19311 + GH8
STP Rep_1001_c_20 Rep_1001_c_20_13 19517 21526 + EAL | GGDEF
TC Rep_1001_c_20 Rep_1001_c_20_14 21751 23034 + 2.A.23.1.7
Gene ID: Rep_1001_c_20_1
Type: TC
Location: 1021 - 2631 (+)
Gene ID: Rep_1001_c_20_2
Type: TC
Location: 2835 - 3854 (+)
Gene ID: Rep_1001_c_20_3
Type: TC
Location: 3864 - 4766 (+)
Gene ID: Rep_1001_c_20_4
Type: TC
Location: 4779 - 5765 (+)
Gene ID: Rep_1001_c_20_5
Type: TC
Location: 5755 - 6783 (+)
Gene ID: Rep_1001_c_20_6
Type: pfam
Location: 7616 - 8203 (+)
Gene ID: Rep_1001_c_20_7
Type: STP
Location: 8194 - 8997 (+)
Gene ID: Rep_1001_c_20_8
Type: CAZyme
Location: 9052 - 11157 (+)
Gene ID: Rep_1001_c_20_9
Type: TC
Location: 11154 - 14033 (+)
Gene ID: Rep_1001_c_20_10
Type: TC
Location: 14045 - 17851 (+)
Gene ID: Rep_1001_c_20_11
Type: pfam
Location: 17851 - 18297 (+)
Gene ID: Rep_1001_c_20_12
Type: CAZyme
Location: 18307 - 19311 (+)
Gene ID: Rep_1001_c_20_13
Type: STP
Location: 19517 - 21526 (+)
Gene ID: Rep_1001_c_20_14
Type: TC
Location: 21751 - 23034 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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