Cluster: Rep_1001_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1001
- CGC Family ID: CGCFAM_00205
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1001_c_2 | Rep_1001_c_2_12 | 11999 | 12460 | + | 4.A.2.1.8 |
| TC | Rep_1001_c_2 | Rep_1001_c_2_13 | 12457 | 12780 | + | 4.A.2.1.10 |
| TC | Rep_1001_c_2 | Rep_1001_c_2_14 | 12722 | 13897 | + | 4.A.2.1.14 |
| CAZyme | Rep_1001_c_2 | Rep_1001_c_2_15 | 13923 | 16556 | + | GH38 |
| TF | Rep_1001_c_2 | Rep_1001_c_2_16 | 16559 | 18466 | + | HTH_11 |
| TC | Rep_1001_c_2 | Rep_1001_c_2_17 | 18509 | 19681 | + | 1.B.15.1.1 |
Gene ID: Rep_1001_c_2_12
Type: TC
Location: 11999 - 12460 (+)
Type: TC
Location: 11999 - 12460 (+)
Gene ID: Rep_1001_c_2_13
Type: TC
Location: 12457 - 12780 (+)
Type: TC
Location: 12457 - 12780 (+)
Gene ID: Rep_1001_c_2_14
Type: TC
Location: 12722 - 13897 (+)
Type: TC
Location: 12722 - 13897 (+)
Gene ID: Rep_1001_c_2_15
Type: CAZyme
Location: 13923 - 16556 (+)
Type: CAZyme
Location: 13923 - 16556 (+)
Gene ID: Rep_1001_c_2_16
Type: TF
Location: 16559 - 18466 (+)
Type: TF
Location: 16559 - 18466 (+)
Gene ID: Rep_1001_c_2_17
Type: TC
Location: 18509 - 19681 (+)
Type: TC
Location: 18509 - 19681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea ananatis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.