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Cluster: Rep_1001_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_15 Rep_1001_c_15_82 94367 95722 + 2.A.3.1.3
TC Rep_1001_c_15 Rep_1001_c_15_83 95899 97302 + 2.A.2.3.4
CAZyme Rep_1001_c_15 Rep_1001_c_15_84 97299 98258 + GH43_26
TC Rep_1001_c_15 Rep_1001_c_15_85 98240 99094 - 9.B.125.1.1
pfam Rep_1001_c_15 Rep_1001_c_15_86 99111 99662 - Amidase_2
pfam Rep_1001_c_15 Rep_1001_c_15_87 99860 100756 + QRPTase_C | QRPTase_N
TC Rep_1001_c_15 Rep_1001_c_15_88 100933 101388 + 3.A.15.2.1
TC Rep_1001_c_15 Rep_1001_c_15_89 101354 102760 + 3.A.15.2.1
TC Rep_1001_c_15 Rep_1001_c_15_90 102753 103952 + 3.A.15.2.1
Gene ID: Rep_1001_c_15_82
Type: TC
Location: 94367 - 95722 (+)
Gene ID: Rep_1001_c_15_83
Type: TC
Location: 95899 - 97302 (+)
Gene ID: Rep_1001_c_15_84
Type: CAZyme
Location: 97299 - 98258 (+)
Gene ID: Rep_1001_c_15_85
Type: TC
Location: 98240 - 99094 (-)
Gene ID: Rep_1001_c_15_86
Type: pfam
Location: 99111 - 99662 (-)
Gene ID: Rep_1001_c_15_87
Type: pfam
Location: 99860 - 100756 (+)
Gene ID: Rep_1001_c_15_88
Type: TC
Location: 100933 - 101388 (+)
Gene ID: Rep_1001_c_15_89
Type: TC
Location: 101354 - 102760 (+)
Gene ID: Rep_1001_c_15_90
Type: TC
Location: 102753 - 103952 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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