Cluster: Rep_1001_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1001_c_15 | Rep_1001_c_15_60 | 64928 | 65698 | - | 3.A.1.105.17 |
| TC | Rep_1001_c_15 | Rep_1001_c_15_61 | 65695 | 66621 | - | 3.A.1.105.17 |
| TC | Rep_1001_c_15 | Rep_1001_c_15_62 | 66728 | 67393 | + | 2.A.53.3.8 |
| STP | Rep_1001_c_15 | Rep_1001_c_15_63 | 67463 | 67999 | - | Pribosyltran |
| pfam | Rep_1001_c_15 | Rep_1001_c_15_64 | 68234 | 69517 | + | Cys_Met_Meta_PP |
| CAZyme | Rep_1001_c_15 | Rep_1001_c_15_65 | 69518 | 71119 | - | AA1 |
| TC | Rep_1001_c_15 | Rep_1001_c_15_66 | 71278 | 71625 | + | 8.A.2.1.3 |
Gene ID: Rep_1001_c_15_60
Type: TC
Location: 64928 - 65698 (-)
Type: TC
Location: 64928 - 65698 (-)
Gene ID: Rep_1001_c_15_61
Type: TC
Location: 65695 - 66621 (-)
Type: TC
Location: 65695 - 66621 (-)
Gene ID: Rep_1001_c_15_62
Type: TC
Location: 66728 - 67393 (+)
Type: TC
Location: 66728 - 67393 (+)
Gene ID: Rep_1001_c_15_63
Type: STP
Location: 67463 - 67999 (-)
Type: STP
Location: 67463 - 67999 (-)
Gene ID: Rep_1001_c_15_64
Type: pfam
Location: 68234 - 69517 (+)
Type: pfam
Location: 68234 - 69517 (+)
Gene ID: Rep_1001_c_15_65
Type: CAZyme
Location: 69518 - 71119 (-)
Type: CAZyme
Location: 69518 - 71119 (-)
Gene ID: Rep_1001_c_15_66
Type: TC
Location: 71278 - 71625 (+)
Type: TC
Location: 71278 - 71625 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea ananatis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.