Cluster: Rep_1001_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_1001
- CGC Family ID: CGCFAM_00123
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_63 | 59968 | 62040 | - | GH77 |
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_64 | 62050 | 64455 | - | GT35 |
| TF | Rep_1001_c_10 | Rep_1001_c_10_65 | 64609 | 65367 | - | HTH_DeoR |
| TC | Rep_1001_c_10 | Rep_1001_c_10_66 | 65407 | 66225 | - | 9.B.104.1.1 |
| STP | Rep_1001_c_10 | Rep_1001_c_10_67 | 66255 | 66581 | - | Rhodanese |
| pfam | Rep_1001_c_10 | Rep_1001_c_10_68 | 66808 | 68313 | + | DAO | DAO_C |
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_69 | 69682 | 72129 | - | GT35 |
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_70 | 72148 | 73581 | - | GT5 |
| pfam | Rep_1001_c_10 | Rep_1001_c_10_71 | 73645 | 74937 | - | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_72 | 74951 | 76930 | - | CBM48 | GH13_11 |
| CAZyme | Rep_1001_c_10 | Rep_1001_c_10_73 | 76927 | 79110 | - | CBM48 | GH13_9 |
| pfam | Rep_1001_c_10 | Rep_1001_c_10_74 | 80001 | 81110 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | Rep_1001_c_10 | Rep_1001_c_10_75 | 81330 | 81923 | + | 2.A.95.1.5 |
| TC | Rep_1001_c_10 | Rep_1001_c_10_76 | 81968 | 83308 | - | 2.A.8.1.8 |
Gene ID: Rep_1001_c_10_63
Type: CAZyme
Location: 59968 - 62040 (-)
Type: CAZyme
Location: 59968 - 62040 (-)
Gene ID: Rep_1001_c_10_64
Type: CAZyme
Location: 62050 - 64455 (-)
Type: CAZyme
Location: 62050 - 64455 (-)
Gene ID: Rep_1001_c_10_65
Type: TF
Location: 64609 - 65367 (-)
Type: TF
Location: 64609 - 65367 (-)
Gene ID: Rep_1001_c_10_66
Type: TC
Location: 65407 - 66225 (-)
Type: TC
Location: 65407 - 66225 (-)
Gene ID: Rep_1001_c_10_67
Type: STP
Location: 66255 - 66581 (-)
Type: STP
Location: 66255 - 66581 (-)
Gene ID: Rep_1001_c_10_68
Type: pfam
Location: 66808 - 68313 (+)
Type: pfam
Location: 66808 - 68313 (+)
Gene ID: Rep_1001_c_10_69
Type: CAZyme
Location: 69682 - 72129 (-)
Type: CAZyme
Location: 69682 - 72129 (-)
Gene ID: Rep_1001_c_10_70
Type: CAZyme
Location: 72148 - 73581 (-)
Type: CAZyme
Location: 72148 - 73581 (-)
Gene ID: Rep_1001_c_10_71
Type: pfam
Location: 73645 - 74937 (-)
Type: pfam
Location: 73645 - 74937 (-)
Gene ID: Rep_1001_c_10_72
Type: CAZyme
Location: 74951 - 76930 (-)
Type: CAZyme
Location: 74951 - 76930 (-)
Gene ID: Rep_1001_c_10_73
Type: CAZyme
Location: 76927 - 79110 (-)
Type: CAZyme
Location: 76927 - 79110 (-)
Gene ID: Rep_1001_c_10_74
Type: pfam
Location: 80001 - 81110 (-)
Type: pfam
Location: 80001 - 81110 (-)
Gene ID: Rep_1001_c_10_75
Type: TC
Location: 81330 - 81923 (+)
Type: TC
Location: 81330 - 81923 (+)
Gene ID: Rep_1001_c_10_76
Type: TC
Location: 81968 - 83308 (-)
Type: TC
Location: 81968 - 83308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea ananatis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.