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Cluster: Rep_1001_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1001_c_0 Rep_1001_c_0_19 20032 21951 - GH23
TC Rep_1001_c_0 Rep_1001_c_0_20 22222 24015 + 3.A.9.1.1
sulfatase Rep_1001_c_0 Rep_1001_c_0_21 24022 27639 + S1_37
TF Rep_1001_c_0 Rep_1001_c_0_22 27649 28350 + GntR
TC Rep_1001_c_0 Rep_1001_c_0_23 28381 29649 + 3.A.1.4.5
TC Rep_1001_c_0 Rep_1001_c_0_24 29727 31292 + 3.A.1.4.4
TC Rep_1001_c_0 Rep_1001_c_0_25 31292 32368 + 3.A.1.4.4
TC Rep_1001_c_0 Rep_1001_c_0_26 32361 33152 + 3.A.1.4.4
TC Rep_1001_c_0 Rep_1001_c_0_27 33153 33851 + 3.A.1.4.4
TC Rep_1001_c_0 Rep_1001_c_0_28 34160 36277 + 1.B.14.1.17
TC Rep_1001_c_0 Rep_1001_c_0_29 36315 37547 - 2.A.1.2.19
Gene ID: Rep_1001_c_0_19
Type: CAZyme
Location: 20032 - 21951 (-)
Gene ID: Rep_1001_c_0_20
Type: TC
Location: 22222 - 24015 (+)
Gene ID: Rep_1001_c_0_21
Type: sulfatase
Location: 24022 - 27639 (+)
Gene ID: Rep_1001_c_0_22
Type: TF
Location: 27649 - 28350 (+)
Gene ID: Rep_1001_c_0_23
Type: TC
Location: 28381 - 29649 (+)
Gene ID: Rep_1001_c_0_24
Type: TC
Location: 29727 - 31292 (+)
Gene ID: Rep_1001_c_0_25
Type: TC
Location: 31292 - 32368 (+)
Gene ID: Rep_1001_c_0_26
Type: TC
Location: 32361 - 33152 (+)
Gene ID: Rep_1001_c_0_27
Type: TC
Location: 33153 - 33851 (+)
Gene ID: Rep_1001_c_0_28
Type: TC
Location: 34160 - 36277 (+)
Gene ID: Rep_1001_c_0_29
Type: TC
Location: 36315 - 37547 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1001_c_0_23 vegetarian > omnivore 1.61270 0.04185

🧭 Explore Read Mapping of CGC

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