dbCAN HGM

Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC56

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
Explore Read Mapping

🧬 Cluster Details

Gene Count: 15
CAZyme Count: 4
Substrate:
Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
Continent: North America
Source Study: Zeng et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_33	34970	35908	+	2.A.7.18.1
TC	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_34	36173	37648	+	2.A.66.2.22
pfam	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_35	38124	39920	+	Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Choline_bind_1 \| Amidase_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3 \| Choline_bind_3
CAZyme	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_36	39938	42757	+	GH73
pfam	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_37	43032	43847	+	LicD
NULL(UNKNOWN)	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_38	44191	45393	+	NULL(UNKNOWN) [View Structural Homologs]
TC	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_39	45436	47319	+	9.B.18.2.1
TC	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_40	47336	47905	+	9.B.18.1.3
pfam	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_41	47930	48826	+	Epimerase \| Polysacc_synt_2 \| RmlD_sub_bind \| NAD_binding_4 \| GDP_Man_Dehyd
CAZyme	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_42	48830	50026	+	GT4
TC	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_43	50043	51104	+	9.B.18.2.1
pfam	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_44	51118	52227	+	Epimerase \| Polysacc_synt_2 \| GPI \| Polysacc_synt_C
pfam	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_45	52231	53355	+	Epimerase_2
CAZyme	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_46	53357	54457	+	GT4
CAZyme	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244	RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_47	54535	55650	+	GT4

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_33
Type: TC
Location: 34970 - 35908 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_34
Type: TC
Location: 36173 - 37648 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_35
Type: pfam
Location: 38124 - 39920 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_36
Type: CAZyme
Location: 39938 - 42757 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_37
Type: pfam
Location: 43032 - 43847 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_38
Type:
Location: 44191 - 45393 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_39
Type: TC
Location: 45436 - 47319 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_40
Type: TC
Location: 47336 - 47905 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_41
Type: pfam
Location: 47930 - 48826 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_42
Type: CAZyme
Location: 48830 - 50026 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_43
Type: TC
Location: 50043 - 51104 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_44
Type: pfam
Location: 51118 - 52227 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_45
Type: pfam
Location: 52231 - 53355 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_46
Type: CAZyme
Location: 53357 - 54457 (+)

Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_5244_47
Type: CAZyme
Location: 54535 - 55650 (+)

Taxonomic Lineage

Domain

Bacteria

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Phylum

Bacillota_A

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Class

Clostridia

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Order

Clostridiales

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Family

Clostridiaceae

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Genus

Clostridium

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Species

Clostridium sp900547475

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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