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Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_20 27431 28828 + GH1
STP RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_21 29051 30346 + SBP_bac_1
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_22 30485 31369 + 3.A.1.1.36
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_23 31359 32249 + 3.A.1.1.2
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_24 32259 32864 + NULL(UNKNOWN)
[View Structural Homologs]
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_25 33069 34241 + GlcNAc_2-epim
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_26 34245 35423 + GH130_1
NULL(UNKNOWN) RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_27 35556 36140 + NULL(UNKNOWN)
[View Structural Homologs]
pfam RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_28 36346 37641 + Enolase_C | Enolase_N
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_29 37844 38950 + CBM35inCE17 | CE17
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_30 38962 40044 + CE2
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_31 40277 41296 + GH130_2
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_32 41732 42805 + GT28
CAZyme RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_33 42808 43491 + CE4
TC RavehSadkaT_2016_SRR6257474_bin.5_k119_1354 RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_34 43484 44563 + 4.D.2.1.5
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_20
Type: CAZyme
Location: 27431 - 28828 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_21
Type: STP
Location: 29051 - 30346 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_22
Type: TC
Location: 30485 - 31369 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_23
Type: TC
Location: 31359 - 32249 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_24
Type:
Location: 32259 - 32864 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_25
Type: pfam
Location: 33069 - 34241 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_26
Type: CAZyme
Location: 34245 - 35423 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_27
Type:
Location: 35556 - 36140 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_28
Type: pfam
Location: 36346 - 37641 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_29
Type: CAZyme
Location: 37844 - 38950 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_30
Type: CAZyme
Location: 38962 - 40044 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_31
Type: CAZyme
Location: 40277 - 41296 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_32
Type: CAZyme
Location: 41732 - 42805 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_33
Type: CAZyme
Location: 42808 - 43491 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1354_34
Type: TC
Location: 43484 - 44563 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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