Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_25 | 22270 | 22974 | + | 3.A.1.122.7 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_26 | 22968 | 26219 | + | 3.A.1.137.2 |
| TF | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_27 | 26270 | 27169 | - | HTH_AraC | HTH_AraC |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_28 | 27307 | 29643 | + | GH31_1 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_29 | 29864 | 32998 | + | SNF2-rel_dom | Helicase_C | SWIM | SNF2_assoc |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_30 | 33297 | 34793 | + | CBM91 | GH43_12 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_31 | 35024 | 36001 | + | 8.A.5.1.6 |
| peptidase | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_32 | 36087 | 37127 | + | M42.UPW |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_33 | 37249 | 37983 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214 | RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_34 | 38326 | 39774 | + | GT5 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_25
Type: TC
Location: 22270 - 22974 (+)
Type: TC
Location: 22270 - 22974 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_26
Type: TC
Location: 22968 - 26219 (+)
Type: TC
Location: 22968 - 26219 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_27
Type: TF
Location: 26270 - 27169 (-)
Type: TF
Location: 26270 - 27169 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_28
Type: CAZyme
Location: 27307 - 29643 (+)
Type: CAZyme
Location: 27307 - 29643 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_29
Type: pfam
Location: 29864 - 32998 (+)
Type: pfam
Location: 29864 - 32998 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_30
Type: CAZyme
Location: 33297 - 34793 (+)
Type: CAZyme
Location: 33297 - 34793 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_31
Type: TC
Location: 35024 - 36001 (+)
Type: TC
Location: 35024 - 36001 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_32
Type: peptidase
Location: 36087 - 37127 (+)
Type: peptidase
Location: 36087 - 37127 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_33
Type:
Location: 37249 - 37983 (-)
Type:
Location: 37249 - 37983 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_1214_34
Type: CAZyme
Location: 38326 - 39774 (+)
Type: CAZyme
Location: 38326 - 39774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.