Cluster: RavehSadkaT_2016_SRR6257474_bin.5_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: RavehSadkaT_2016_SRR6257474_bin.5
- CGC Family ID: CGCFAM_01920
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_2 | 1988 | 3127 | - | CE9 |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_3 | 3295 | 5526 | + | 3.A.7.16.1 |
| NULL(UNKNOWN) | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_4 | 5545 | 6522 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_5 | 6510 | 7196 | + | 3.A.11.1.4 |
| pfam | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_6 | 7634 | 8161 | + | Ribosomal_S30AE | Ribosom_S30AE_C |
| TC | RavehSadkaT_2016_SRR6257474_bin.5_k119_964 | RavehSadkaT_2016_SRR6257474_bin.5_k119_964_7 | 8392 | 10935 | + | 3.A.5.1.3 |
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_2
Type: CAZyme
Location: 1988 - 3127 (-)
Type: CAZyme
Location: 1988 - 3127 (-)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_3
Type: TC
Location: 3295 - 5526 (+)
Type: TC
Location: 3295 - 5526 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_4
Type:
Location: 5545 - 6522 (+)
Type:
Location: 5545 - 6522 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_5
Type: TC
Location: 6510 - 7196 (+)
Type: TC
Location: 6510 - 7196 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_6
Type: pfam
Location: 7634 - 8161 (+)
Type: pfam
Location: 7634 - 8161 (+)
Gene ID: RavehSadkaT_2016_SRR6257474_bin.5_k119_964_7
Type: TC
Location: 8392 - 10935 (+)
Type: TC
Location: 8392 - 10935 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900547475
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.