Cluster: RavehSadkaT_2015_SRR1779126_bin.1_CGC37
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate: host glycan/beta-glucan
- Genome ID: RavehSadkaT_2015_SRR1779126_bin.1
- CGC Family ID: CGCFAM_00020
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_1 | 72 | 1397 | + | 4.A.3.2.2 |
| NULL(UNKNOWN) | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_2 | 1459 | 2361 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_3 | 2485 | 2799 | + | 4.A.3.2.8 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_4 | 2835 | 3155 | + | 4.A.3.2.2 |
| pfam | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_5 | 3496 | 4329 | + | PRD | PRD | CAT_RBD |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_6 | 4515 | 6374 | + | 4.A.1.2.11 |
| CAZyme | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_7 | 6390 | 7802 | + | GH1 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_8 | 8054 | 9331 | + | 3.A.1.1.7 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_9 | 9403 | 10290 | + | 3.A.1.1.25 |
| TC | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042 | RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_10 | 10303 | 11184 | + | 3.A.1.1.34 |
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_1
Type: TC
Location: 72 - 1397 (+)
Type: TC
Location: 72 - 1397 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_2
Type:
Location: 1459 - 2361 (+)
Type:
Location: 1459 - 2361 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_3
Type: TC
Location: 2485 - 2799 (+)
Type: TC
Location: 2485 - 2799 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_4
Type: TC
Location: 2835 - 3155 (+)
Type: TC
Location: 2835 - 3155 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_5
Type: pfam
Location: 3496 - 4329 (+)
Type: pfam
Location: 3496 - 4329 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_6
Type: TC
Location: 4515 - 6374 (+)
Type: TC
Location: 4515 - 6374 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_7
Type: CAZyme
Location: 6390 - 7802 (+)
Type: CAZyme
Location: 6390 - 7802 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_8
Type: TC
Location: 8054 - 9331 (+)
Type: TC
Location: 8054 - 9331 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_9
Type: TC
Location: 9403 - 10290 (+)
Type: TC
Location: 9403 - 10290 (+)
Gene ID: RavehSadkaT_2015_SRR1779126_bin.1_k141_9042_10
Type: TC
Location: 10303 - 11184 (+)
Type: TC
Location: 10303 - 11184 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.