Cluster: PUL0663_HRGMv2_0149_C1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate: arabinogalactan
- Genome ID: HRGMv2_0149
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_42 | 46956 | 48233 | + | PL42 |
| CAZyme | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_43 | 48249 | 50558 | + | GH105 | GH154 |
| CAZyme | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_44 | 50687 | 51679 | + | GH43_17 |
| CAZyme | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_45 | 51720 | 52871 | + | GH43_24 |
| TF | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_46 | 52941 | 56969 | - | HTH_AraC | Mga |
| TC | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_47 | 57417 | 60719 | + | 1.B.14.6.1 |
| pfam | PUL0663_HRGMv2_0149_C1 | HRGMv2_0149_8_48 | 60735 | 62762 | + | SusD_RagB | SusD-like_3 |
Gene ID: HRGMv2_0149_8_42
Type: CAZyme
Location: 46956 - 48233 (+)
Type: CAZyme
Location: 46956 - 48233 (+)
Gene ID: HRGMv2_0149_8_43
Type: CAZyme
Location: 48249 - 50558 (+)
Type: CAZyme
Location: 48249 - 50558 (+)
Gene ID: HRGMv2_0149_8_44
Type: CAZyme
Location: 50687 - 51679 (+)
Type: CAZyme
Location: 50687 - 51679 (+)
Gene ID: HRGMv2_0149_8_45
Type: CAZyme
Location: 51720 - 52871 (+)
Type: CAZyme
Location: 51720 - 52871 (+)
Gene ID: HRGMv2_0149_8_46
Type: TF
Location: 52941 - 56969 (-)
Type: TF
Location: 52941 - 56969 (-)
Gene ID: HRGMv2_0149_8_47
Type: TC
Location: 57417 - 60719 (+)
Type: TC
Location: 57417 - 60719 (+)
Gene ID: HRGMv2_0149_8_48
Type: pfam
Location: 60735 - 62762 (+)
Type: pfam
Location: 60735 - 62762 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Composition
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