Cluster: PUL0658_HRGMv2_2727_C0
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: beta-mannan
- Genome ID: HRGMv2_2727
- CGC Family ID: CGCFAM_00226
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_1 | 188 | 1300 | + | CE2 |
| TF | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_2 | 1462 | 2448 | - | LacI |
| STP | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_3 | 2859 | 4271 | + | SBP_bac_1 |
| TC | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_4 | 4343 | 5290 | + | 3.A.1.1.28 |
| TC | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_5 | 5307 | 6161 | + | 3.A.1.1.34 |
| CAZyme | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_6 | 6279 | 7298 | + | GH130_2 |
| pfam | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_7 | 7439 | 8620 | + | GlcNAc_2-epim |
| CAZyme | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_8 | 8607 | 9797 | + | GH130_1 |
| TC | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_9 | 9835 | 10515 | + | 9.B.28.1.2 |
| CAZyme | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_10 | 10512 | 12677 | + | GH36 |
| pfam | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_11 | 12749 | 14434 | + | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| pfam | PUL0658_HRGMv2_2727_C0 | HRGMv2_2727_1_12 | 14565 | 15479 | + | PMI_typeI_cat | MPI_cupin_dom |
Gene ID: HRGMv2_2727_1_1
Type: CAZyme
Location: 188 - 1300 (+)
Type: CAZyme
Location: 188 - 1300 (+)
Gene ID: HRGMv2_2727_1_2
Type: TF
Location: 1462 - 2448 (-)
Type: TF
Location: 1462 - 2448 (-)
Gene ID: HRGMv2_2727_1_3
Type: STP
Location: 2859 - 4271 (+)
Type: STP
Location: 2859 - 4271 (+)
Gene ID: HRGMv2_2727_1_4
Type: TC
Location: 4343 - 5290 (+)
Type: TC
Location: 4343 - 5290 (+)
Gene ID: HRGMv2_2727_1_5
Type: TC
Location: 5307 - 6161 (+)
Type: TC
Location: 5307 - 6161 (+)
Gene ID: HRGMv2_2727_1_6
Type: CAZyme
Location: 6279 - 7298 (+)
Type: CAZyme
Location: 6279 - 7298 (+)
Gene ID: HRGMv2_2727_1_7
Type: pfam
Location: 7439 - 8620 (+)
Type: pfam
Location: 7439 - 8620 (+)
Gene ID: HRGMv2_2727_1_8
Type: CAZyme
Location: 8607 - 9797 (+)
Type: CAZyme
Location: 8607 - 9797 (+)
Gene ID: HRGMv2_2727_1_9
Type: TC
Location: 9835 - 10515 (+)
Type: TC
Location: 9835 - 10515 (+)
Gene ID: HRGMv2_2727_1_10
Type: CAZyme
Location: 10512 - 12677 (+)
Type: CAZyme
Location: 10512 - 12677 (+)
Gene ID: HRGMv2_2727_1_11
Type: pfam
Location: 12749 - 14434 (+)
Type: pfam
Location: 12749 - 14434 (+)
Gene ID: HRGMv2_2727_1_12
Type: pfam
Location: 14565 - 15479 (+)
Type: pfam
Location: 14565 - 15479 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Faecalibacterium
Species
Faecalibacterium prausnitzii_E
Gene Composition
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