Cluster: PUL0216
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate: alginate
- Genome ID: PUL0216
- CGC Family ID: CGCFAM_06409
- Continent: NA
- Source Study: dbCAN-PUL Database →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | AB011415 | cat | 1 | 624 | - | AA2 |
| pfam | AB011415 | mdr | 1219 | 2382 | - | MFS_1 | MFS_1_like |
| CAZyme | AB011415 | aly | 2533 | 4458 | - | PL5 | PL7 |
| TF | AB011415 | ccpA | 4500 | 5561 | - | LacI |
| TC | AB011415 | algS | 5764 | 6855 | + | 3.A.1.1.10 |
| TC | AB011415 | algM1 | 6950 | 7924 | + | 3.A.1.1.10 |
| TC | AB011415 | algM2 | 7981 | 8862 | + | 3.A.1.1.10 |
| TC | AB011415 | algQ1 | 8941 | 10521 | + | 3.A.1.1.10 |
| TC | AB011415 | algQ2 | 10668 | 12218 | + | 3.A.1.1.10 |
| CAZyme | AB011415 | oal | 12453 | 14738 | + | PL15_1 |
Gene ID: cat
Type: CAZyme
Location: 1 - 624 (-)
Type: CAZyme
Location: 1 - 624 (-)
Gene ID: mdr
Type: pfam
Location: 1219 - 2382 (-)
Type: pfam
Location: 1219 - 2382 (-)
Gene ID: aly
Type: CAZyme
Location: 2533 - 4458 (-)
Type: CAZyme
Location: 2533 - 4458 (-)
Gene ID: ccpA
Type: TF
Location: 4500 - 5561 (-)
Type: TF
Location: 4500 - 5561 (-)
Gene ID: algS
Type: TC
Location: 5764 - 6855 (+)
Type: TC
Location: 5764 - 6855 (+)
Gene ID: algM1
Type: TC
Location: 6950 - 7924 (+)
Type: TC
Location: 6950 - 7924 (+)
Gene ID: algM2
Type: TC
Location: 7981 - 8862 (+)
Type: TC
Location: 7981 - 8862 (+)
Gene ID: algQ1
Type: TC
Location: 8941 - 10521 (+)
Type: TC
Location: 8941 - 10521 (+)
Gene ID: algQ2
Type: TC
Location: 10668 - 12218 (+)
Type: TC
Location: 10668 - 12218 (+)
Gene ID: oal
Type: CAZyme
Location: 12453 - 14738 (+)
Type: CAZyme
Location: 12453 - 14738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingomonadaceae
Genus
Sphingomonas
Species
Sphingomonas sp.
Gene Composition
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