Cluster: MGYG000004866_CGC21
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: MGYG000004866
- CGC Family ID: CGCFAM_00004
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004866_32 | MGYG000004866_32_9 | 10901 | 12958 | + | CBM48 | GH13_9 |
| pfam | MGYG000004866_32 | MGYG000004866_32_10 | 13028 | 14251 | + | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000004866_32 | MGYG000004866_32_11 | 14245 | 15369 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000004866_32 | MGYG000004866_32_12 | 15488 | 16906 | + | GT5 |
| pfam | MGYG000004866_32 | MGYG000004866_32_13 | 17030 | 17827 | + | Peptidase_C39_2 |
| pfam | MGYG000004866_32 | MGYG000004866_32_14 | 17894 | 18526 | - | TMP-TENI |
| TC | MGYG000004866_32 | MGYG000004866_32_15 | 19014 | 19529 | + | 3.A.1.26.5 |
Gene ID: MGYG000004866_32_9
Type: CAZyme
Location: 10901 - 12958 (+)
Type: CAZyme
Location: 10901 - 12958 (+)
Gene ID: MGYG000004866_32_10
Type: pfam
Location: 13028 - 14251 (+)
Type: pfam
Location: 13028 - 14251 (+)
Gene ID: MGYG000004866_32_11
Type: pfam
Location: 14245 - 15369 (+)
Type: pfam
Location: 14245 - 15369 (+)
Gene ID: MGYG000004866_32_12
Type: CAZyme
Location: 15488 - 16906 (+)
Type: CAZyme
Location: 15488 - 16906 (+)
Gene ID: MGYG000004866_32_13
Type: pfam
Location: 17030 - 17827 (+)
Type: pfam
Location: 17030 - 17827 (+)
Gene ID: MGYG000004866_32_14
Type: pfam
Location: 17894 - 18526 (-)
Type: pfam
Location: 17894 - 18526 (-)
Gene ID: MGYG000004866_32_15
Type: TC
Location: 19014 - 19529 (+)
Type: TC
Location: 19014 - 19529 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger variabilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.