Cluster: MGYG000004866_CGC20
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000004866
- CGC Family ID: CGCFAM_11049
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004866_31 | MGYG000004866_31_2 | 2753 | 3685 | - | CBM13 |
| TC | MGYG000004866_31 | MGYG000004866_31_3 | 4024 | 5952 | - | 3.A.1.135.5 |
| TC | MGYG000004866_31 | MGYG000004866_31_4 | 5952 | 7709 | - | 3.A.1.135.5 |
| TF | MGYG000004866_31 | MGYG000004866_31_5 | 7703 | 8200 | - | MarR |
| TC | MGYG000004866_31 | MGYG000004866_31_6 | 8394 | 12260 | - | 3.A.1.137.2 |
| TC | MGYG000004866_31 | MGYG000004866_31_7 | 12261 | 12968 | - | 3.A.1.125.2 |
| pfam | MGYG000004866_31 | MGYG000004866_31_8 | 13099 | 13614 | - | Transpeptidase |
| CAZyme | MGYG000004866_31 | MGYG000004866_31_9 | 13717 | 15252 | - | GH77 |
| TC | MGYG000004866_31 | MGYG000004866_31_10 | 15306 | 16154 | - | 3.A.1.1.45 |
| TC | MGYG000004866_31 | MGYG000004866_31_11 | 16154 | 17005 | - | 3.A.1.1.45 |
| TC | MGYG000004866_31 | MGYG000004866_31_12 | 17113 | 18477 | - | 3.A.1.1.45 |
| CAZyme | MGYG000004866_31 | MGYG000004866_31_13 | 18845 | 19840 | - | GT4 |
| pfam | MGYG000004866_31 | MGYG000004866_31_14 | 19846 | 20430 | - | VTT_dom |
| CAZyme | MGYG000004866_31 | MGYG000004866_31_15 | 20427 | 21599 | - | GT4 |
| CAZyme | MGYG000004866_31 | MGYG000004866_31_16 | 21820 | 23457 | + | GH13_31 |
Gene ID: MGYG000004866_31_2
Type: CAZyme
Location: 2753 - 3685 (-)
Type: CAZyme
Location: 2753 - 3685 (-)
Gene ID: MGYG000004866_31_3
Type: TC
Location: 4024 - 5952 (-)
Type: TC
Location: 4024 - 5952 (-)
Gene ID: MGYG000004866_31_4
Type: TC
Location: 5952 - 7709 (-)
Type: TC
Location: 5952 - 7709 (-)
Gene ID: MGYG000004866_31_5
Type: TF
Location: 7703 - 8200 (-)
Type: TF
Location: 7703 - 8200 (-)
Gene ID: MGYG000004866_31_6
Type: TC
Location: 8394 - 12260 (-)
Type: TC
Location: 8394 - 12260 (-)
Gene ID: MGYG000004866_31_7
Type: TC
Location: 12261 - 12968 (-)
Type: TC
Location: 12261 - 12968 (-)
Gene ID: MGYG000004866_31_8
Type: pfam
Location: 13099 - 13614 (-)
Type: pfam
Location: 13099 - 13614 (-)
Gene ID: MGYG000004866_31_9
Type: CAZyme
Location: 13717 - 15252 (-)
Type: CAZyme
Location: 13717 - 15252 (-)
Gene ID: MGYG000004866_31_10
Type: TC
Location: 15306 - 16154 (-)
Type: TC
Location: 15306 - 16154 (-)
Gene ID: MGYG000004866_31_11
Type: TC
Location: 16154 - 17005 (-)
Type: TC
Location: 16154 - 17005 (-)
Gene ID: MGYG000004866_31_12
Type: TC
Location: 17113 - 18477 (-)
Type: TC
Location: 17113 - 18477 (-)
Gene ID: MGYG000004866_31_13
Type: CAZyme
Location: 18845 - 19840 (-)
Type: CAZyme
Location: 18845 - 19840 (-)
Gene ID: MGYG000004866_31_14
Type: pfam
Location: 19846 - 20430 (-)
Type: pfam
Location: 19846 - 20430 (-)
Gene ID: MGYG000004866_31_15
Type: CAZyme
Location: 20427 - 21599 (-)
Type: CAZyme
Location: 20427 - 21599 (-)
Gene ID: MGYG000004866_31_16
Type: CAZyme
Location: 21820 - 23457 (+)
Type: CAZyme
Location: 21820 - 23457 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Gemmiger
Species
Gemmiger variabilis_B
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.