Cluster: MGYG000004424_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004424
- CGC Family ID: CGCFAM_00289
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004424_1 | MGYG000004424_1_43 | 63982 | 66135 | + | 9.B.97.5.1 |
| TC | MGYG000004424_1 | MGYG000004424_1_44 | 66558 | 67799 | - | 2.A.55.3.6 |
| STP | MGYG000004424_1 | MGYG000004424_1_45 | 67815 | 69695 | - | CBS | CBS |
| CAZyme | MGYG000004424_1 | MGYG000004424_1_46 | 70167 | 77363 | - | GH31_18 |
| CAZyme | MGYG000004424_1 | MGYG000004424_1_47 | 77782 | 78936 | - | CE4 |
| CAZyme | MGYG000004424_1 | MGYG000004424_1_48 | 79282 | 80670 | - | CE4 |
Gene ID: MGYG000004424_1_43
Type: TC
Location: 63982 - 66135 (+)
Type: TC
Location: 63982 - 66135 (+)
Gene ID: MGYG000004424_1_44
Type: TC
Location: 66558 - 67799 (-)
Type: TC
Location: 66558 - 67799 (-)
Gene ID: MGYG000004424_1_45
Type: STP
Location: 67815 - 69695 (-)
Type: STP
Location: 67815 - 69695 (-)
Gene ID: MGYG000004424_1_46
Type: CAZyme
Location: 70167 - 77363 (-)
Type: CAZyme
Location: 70167 - 77363 (-)
Gene ID: MGYG000004424_1_47
Type: CAZyme
Location: 77782 - 78936 (-)
Type: CAZyme
Location: 77782 - 78936 (-)
Gene ID: MGYG000004424_1_48
Type: CAZyme
Location: 79282 - 80670 (-)
Type: CAZyme
Location: 79282 - 80670 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900548365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.