Cluster: MGYG000004275_CGC3
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004275
- CGC Family ID: CGCFAM_05364
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004275_2 | MGYG000004275_2_19 | 18040 | 19431 | - | 3.A.2.1.5 |
| TC | MGYG000004275_2 | MGYG000004275_2_20 | 19486 | 20382 | - | 3.A.2.1.5 |
| TC | MGYG000004275_2 | MGYG000004275_2_21 | 20384 | 21892 | - | 3.A.2.1.5 |
| pfam | MGYG000004275_2 | MGYG000004275_2_22 | 21902 | 22408 | - | OSCP |
| pfam | MGYG000004275_2 | MGYG000004275_2_23 | 22405 | 22899 | - | ATP-synt_B |
| TC | MGYG000004275_2 | MGYG000004275_2_24 | 22954 | 23160 | - | 3.A.2.1.5 |
| TC | MGYG000004275_2 | MGYG000004275_2_25 | 23190 | 23396 | - | 3.A.2.1.5 |
| TC | MGYG000004275_2 | MGYG000004275_2_26 | 23437 | 24171 | - | 3.A.2.1.5 |
| CAZyme | MGYG000004275_2 | MGYG000004275_2_27 | 24627 | 27239 | - | GH5_4 |
| CAZyme | MGYG000004275_2 | MGYG000004275_2_28 | 27548 | 30004 | - | GH94 |
Gene ID: MGYG000004275_2_19
Type: TC
Location: 18040 - 19431 (-)
Type: TC
Location: 18040 - 19431 (-)
Gene ID: MGYG000004275_2_20
Type: TC
Location: 19486 - 20382 (-)
Type: TC
Location: 19486 - 20382 (-)
Gene ID: MGYG000004275_2_21
Type: TC
Location: 20384 - 21892 (-)
Type: TC
Location: 20384 - 21892 (-)
Gene ID: MGYG000004275_2_22
Type: pfam
Location: 21902 - 22408 (-)
Type: pfam
Location: 21902 - 22408 (-)
Gene ID: MGYG000004275_2_23
Type: pfam
Location: 22405 - 22899 (-)
Type: pfam
Location: 22405 - 22899 (-)
Gene ID: MGYG000004275_2_24
Type: TC
Location: 22954 - 23160 (-)
Type: TC
Location: 22954 - 23160 (-)
Gene ID: MGYG000004275_2_25
Type: TC
Location: 23190 - 23396 (-)
Type: TC
Location: 23190 - 23396 (-)
Gene ID: MGYG000004275_2_26
Type: TC
Location: 23437 - 24171 (-)
Type: TC
Location: 23437 - 24171 (-)
Gene ID: MGYG000004275_2_27
Type: CAZyme
Location: 24627 - 27239 (-)
Type: CAZyme
Location: 24627 - 27239 (-)
Gene ID: MGYG000004275_2_28
Type: CAZyme
Location: 27548 - 30004 (-)
Type: CAZyme
Location: 27548 - 30004 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004275_2_22 | vegan > omnivore | 1.45911 | 0.00364 |
| MGYG000004275_2_22 | vegetarian > omnivore | 1.04248 | 0.03029 |
| MGYG000004275_2_24 | vegan > omnivore | 1.49540 | 0.00364 |
| MGYG000004275_2_24 | vegetarian > omnivore | 1.35230 | 0.02254 |
| MGYG000004275_2_26 | vegan > omnivore | 1.29043 | 0.00364 |