Cluster: MGYG000004275_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004275
- CGC Family ID: CGCFAM_03007
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004275_29 | MGYG000004275_29_4 | 4005 | 6764 | - | CBM3 | GH9 |
| TF | MGYG000004275_29 | MGYG000004275_29_5 | 6822 | 7097 | - | Trp_repressor |
| TC | MGYG000004275_29 | MGYG000004275_29_6 | 7461 | 9179 | - | 1.A.11.2.7 |
| TC | MGYG000004275_29 | MGYG000004275_29_7 | 9467 | 10300 | - | 3.A.1.132.3 |
| TF | MGYG000004275_29 | MGYG000004275_29_8 | 10510 | 11187 | + | Trp_repressor |
| TC | MGYG000004275_29 | MGYG000004275_29_9 | 11253 | 12797 | - | 2.A.21.2.3 |
Gene ID: MGYG000004275_29_4
Type: CAZyme
Location: 4005 - 6764 (-)
Type: CAZyme
Location: 4005 - 6764 (-)
Gene ID: MGYG000004275_29_5
Type: TF
Location: 6822 - 7097 (-)
Type: TF
Location: 6822 - 7097 (-)
Gene ID: MGYG000004275_29_6
Type: TC
Location: 7461 - 9179 (-)
Type: TC
Location: 7461 - 9179 (-)
Gene ID: MGYG000004275_29_7
Type: TC
Location: 9467 - 10300 (-)
Type: TC
Location: 9467 - 10300 (-)
Gene ID: MGYG000004275_29_8
Type: TF
Location: 10510 - 11187 (+)
Type: TF
Location: 10510 - 11187 (+)
Gene ID: MGYG000004275_29_9
Type: TC
Location: 11253 - 12797 (-)
Type: TC
Location: 11253 - 12797 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004275_29_4 | vegan > omnivore | 1.54399 | 0.00364 |
| MGYG000004275_29_4 | vegetarian > omnivore | 1.10008 | 0.03029 |