Cluster: MGYG000004275_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004275
- CGC Family ID: CGCFAM_04263
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004275_1 | MGYG000004275_1_9 | 8780 | 11623 | + | GH74 |
| CAZyme | MGYG000004275_1 | MGYG000004275_1_10 | 12113 | 14812 | - | CBM3 | GH9 |
| TF | MGYG000004275_1 | MGYG000004275_1_11 | 15353 | 15808 | + | MarR |
| TC | MGYG000004275_1 | MGYG000004275_1_12 | 15805 | 17538 | + | 3.A.1.135.5 |
| TC | MGYG000004275_1 | MGYG000004275_1_13 | 17535 | 19433 | + | 3.A.1.135.5 |
Gene ID: MGYG000004275_1_9
Type: CAZyme
Location: 8780 - 11623 (+)
Type: CAZyme
Location: 8780 - 11623 (+)
Gene ID: MGYG000004275_1_10
Type: CAZyme
Location: 12113 - 14812 (-)
Type: CAZyme
Location: 12113 - 14812 (-)
Gene ID: MGYG000004275_1_11
Type: TF
Location: 15353 - 15808 (+)
Type: TF
Location: 15353 - 15808 (+)
Gene ID: MGYG000004275_1_12
Type: TC
Location: 15805 - 17538 (+)
Type: TC
Location: 15805 - 17538 (+)
Gene ID: MGYG000004275_1_13
Type: TC
Location: 17535 - 19433 (+)
Type: TC
Location: 17535 - 19433 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp000437175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004275_1_9 | vegan > omnivore | 1.47534 | 0.00364 |
| MGYG000004275_1_9 | vegetarian > omnivore | 1.17161 | 0.03029 |
| MGYG000004275_1_10 | vegan > omnivore | 1.27622 | 0.00364 |