Cluster: MGYG000003419_CGC7
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003419
- CGC Family ID: CGCFAM_05903
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003419_77 | MGYG000003419_77_6 | 5175 | 5915 | + | 1.B.42.1.2 |
| pfam | MGYG000003419_77 | MGYG000003419_77_7 | 5915 | 6895 | + | Kelch_1 | Kelch_1 | Kelch_1 | Kelch_2 | Kelch_3 | Kelch_4 | Kelch_4 | Kelch_KLHDC2_KLHL20_DRC7 |
| TC | MGYG000003419_77 | MGYG000003419_77_8 | 6849 | 8360 | + | 1.B.73.2.2 |
| pfam | MGYG000003419_77 | MGYG000003419_77_9 | 8382 | 8984 | + | DUF4254 |
| CAZyme | MGYG000003419_77 | MGYG000003419_77_10 | 8994 | 9980 | + | GT90 |
| CAZyme | MGYG000003419_77 | MGYG000003419_77_11 | 9973 | 10950 | + | GT9 |
| pfam | MGYG000003419_77 | MGYG000003419_77_12 | 10941 | 11657 | + | Kdo |
| CAZyme | MGYG000003419_77 | MGYG000003419_77_13 | 11654 | 12538 | + | GT2 |
| pfam | MGYG000003419_77 | MGYG000003419_77_14 | 12393 | 13733 | - | Wzy_C |
| CAZyme | MGYG000003419_77 | MGYG000003419_77_15 | 13726 | 14769 | - | GT4 |
| CAZyme | MGYG000003419_77 | MGYG000003419_77_16 | 14766 | 15872 | - | GT4 |
Gene ID: MGYG000003419_77_6
Type: TC
Location: 5175 - 5915 (+)
Type: TC
Location: 5175 - 5915 (+)
Gene ID: MGYG000003419_77_7
Type: pfam
Location: 5915 - 6895 (+)
Type: pfam
Location: 5915 - 6895 (+)
Gene ID: MGYG000003419_77_8
Type: TC
Location: 6849 - 8360 (+)
Type: TC
Location: 6849 - 8360 (+)
Gene ID: MGYG000003419_77_9
Type: pfam
Location: 8382 - 8984 (+)
Type: pfam
Location: 8382 - 8984 (+)
Gene ID: MGYG000003419_77_10
Type: CAZyme
Location: 8994 - 9980 (+)
Type: CAZyme
Location: 8994 - 9980 (+)
Gene ID: MGYG000003419_77_11
Type: CAZyme
Location: 9973 - 10950 (+)
Type: CAZyme
Location: 9973 - 10950 (+)
Gene ID: MGYG000003419_77_12
Type: pfam
Location: 10941 - 11657 (+)
Type: pfam
Location: 10941 - 11657 (+)
Gene ID: MGYG000003419_77_13
Type: CAZyme
Location: 11654 - 12538 (+)
Type: CAZyme
Location: 11654 - 12538 (+)
Gene ID: MGYG000003419_77_14
Type: pfam
Location: 12393 - 13733 (-)
Type: pfam
Location: 12393 - 13733 (-)
Gene ID: MGYG000003419_77_15
Type: CAZyme
Location: 13726 - 14769 (-)
Type: CAZyme
Location: 13726 - 14769 (-)
Gene ID: MGYG000003419_77_16
Type: CAZyme
Location: 14766 - 15872 (-)
Type: CAZyme
Location: 14766 - 15872 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Species
RF16 sp900766775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.