Cluster: MGYG000003419_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003419
- CGC Family ID: CGCFAM_05285
- Continent: Oceania
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003419_128 | MGYG000003419_128_1 | 374 | 2320 | - | 8.A.46.1.3 |
| TC | MGYG000003419_128 | MGYG000003419_128_2 | 2327 | 5728 | - | 1.B.14.6.1 |
| CAZyme | MGYG000003419_128 | MGYG000003419_128_3 | 5786 | 7285 | - | GH43_10 |
| NULL(UNKNOWN) | MGYG000003419_128 | MGYG000003419_128_4 | 7309 | 8445 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003419_128 | MGYG000003419_128_5 | 8481 | 10313 | - | PL10_1 |
| CAZyme | MGYG000003419_128 | MGYG000003419_128_6 | 10310 | 11971 | - | PL10_1 |
| CAZyme | MGYG000003419_128 | MGYG000003419_128_7 | 11971 | 15444 | - | CE8 |
| CAZyme | MGYG000003419_128 | MGYG000003419_128_8 | 15720 | 18815 | - | CBM6 | GH3 |
| TF | MGYG000003419_128 | MGYG000003419_128_9 | 18991 | 21450 | + | HTH_AraC |
| TC | MGYG000003419_128 | MGYG000003419_128_10 | 21462 | 22868 | - | 2.A.1.1.3 |
Gene ID: MGYG000003419_128_1
Type: TC
Location: 374 - 2320 (-)
Type: TC
Location: 374 - 2320 (-)
Gene ID: MGYG000003419_128_2
Type: TC
Location: 2327 - 5728 (-)
Type: TC
Location: 2327 - 5728 (-)
Gene ID: MGYG000003419_128_3
Type: CAZyme
Location: 5786 - 7285 (-)
Type: CAZyme
Location: 5786 - 7285 (-)
Gene ID: MGYG000003419_128_4
Type:
Location: 7309 - 8445 (-)
Type:
Location: 7309 - 8445 (-)
Gene ID: MGYG000003419_128_5
Type: CAZyme
Location: 8481 - 10313 (-)
Type: CAZyme
Location: 8481 - 10313 (-)
Gene ID: MGYG000003419_128_6
Type: CAZyme
Location: 10310 - 11971 (-)
Type: CAZyme
Location: 10310 - 11971 (-)
Gene ID: MGYG000003419_128_7
Type: CAZyme
Location: 11971 - 15444 (-)
Type: CAZyme
Location: 11971 - 15444 (-)
Gene ID: MGYG000003419_128_8
Type: CAZyme
Location: 15720 - 18815 (-)
Type: CAZyme
Location: 15720 - 18815 (-)
Gene ID: MGYG000003419_128_9
Type: TF
Location: 18991 - 21450 (+)
Type: TF
Location: 18991 - 21450 (+)
Gene ID: MGYG000003419_128_10
Type: TC
Location: 21462 - 22868 (-)
Type: TC
Location: 21462 - 22868 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Paludibacteraceae
Genus
RF16
Species
RF16 sp900766775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.