Cluster: MGYG000003383_CGC60
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate: arabinogalactan/xylan
- Genome ID: MGYG000003383
- CGC Family ID: CGCFAM_00936
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_34 | MGYG000003383_34_121 | 171717 | 172451 | + | 1.A.8.2.7 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_122 | 172848 | 174413 | - | GH43_4 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_123 | 174539 | 176122 | - | GH43_4 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_124 | 176322 | 178559 | + | GH43_27 |
| TF | MGYG000003383_34 | MGYG000003383_34_125 | 178656 | 179714 | + | LacI |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_126 | 180119 | 181183 | + | GH43_26 |
| STP | MGYG000003383_34 | MGYG000003383_34_127 | 181628 | 182938 | + | SBP_bac_1 |
| TC | MGYG000003383_34 | MGYG000003383_34_128 | 183008 | 183952 | + | 3.A.1.1.36 |
| TC | MGYG000003383_34 | MGYG000003383_34_129 | 183949 | 184872 | + | 3.A.1.1.36 |
Gene ID: MGYG000003383_34_121
Type: TC
Location: 171717 - 172451 (+)
Type: TC
Location: 171717 - 172451 (+)
Gene ID: MGYG000003383_34_122
Type: CAZyme
Location: 172848 - 174413 (-)
Type: CAZyme
Location: 172848 - 174413 (-)
Gene ID: MGYG000003383_34_123
Type: CAZyme
Location: 174539 - 176122 (-)
Type: CAZyme
Location: 174539 - 176122 (-)
Gene ID: MGYG000003383_34_124
Type: CAZyme
Location: 176322 - 178559 (+)
Type: CAZyme
Location: 176322 - 178559 (+)
Gene ID: MGYG000003383_34_125
Type: TF
Location: 178656 - 179714 (+)
Type: TF
Location: 178656 - 179714 (+)
Gene ID: MGYG000003383_34_126
Type: CAZyme
Location: 180119 - 181183 (+)
Type: CAZyme
Location: 180119 - 181183 (+)
Gene ID: MGYG000003383_34_127
Type: STP
Location: 181628 - 182938 (+)
Type: STP
Location: 181628 - 182938 (+)
Gene ID: MGYG000003383_34_128
Type: TC
Location: 183008 - 183952 (+)
Type: TC
Location: 183008 - 183952 (+)
Gene ID: MGYG000003383_34_129
Type: TC
Location: 183949 - 184872 (+)
Type: TC
Location: 183949 - 184872 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003383_34_122 | vegan > omnivore | 1.56179 | 0.00855 |
| MGYG000003383_34_122 | vegetarian > omnivore | 1.01645 | 0.00845 |
| MGYG000003383_34_123 | vegan > omnivore | 1.70713 | 0.00855 |
| MGYG000003383_34_123 | vegetarian > omnivore | 1.07253 | 0.00845 |
| MGYG000003383_34_127 | vegan > omnivore | 1.92854 | 0.00855 |
| MGYG000003383_34_127 | vegetarian > omnivore | 1.31352 | 0.00845 |
| MGYG000003383_34_128 | vegan > omnivore | 2.15724 | 0.00855 |
| MGYG000003383_34_128 | vegetarian > omnivore | 1.44668 | 0.00845 |
| MGYG000003383_34_129 | vegan > omnivore | 1.61324 | 0.00855 |