Cluster: MGYG000003383_CGC6
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000003383
- CGC Family ID: CGCFAM_00002
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_10 | MGYG000003383_10_6 | 6608 | 7936 | + | 2.A.55.3.3 |
| TC | MGYG000003383_10 | MGYG000003383_10_7 | 9006 | 10691 | - | 2.A.1.3.61 |
| TC | MGYG000003383_10 | MGYG000003383_10_8 | 11029 | 12708 | - | 9.B.18.1.2 |
| pfam | MGYG000003383_10 | MGYG000003383_10_9 | 12982 | 13587 | + | LMWPc |
| CAZyme | MGYG000003383_10 | MGYG000003383_10_10 | 14120 | 14965 | + | GT2 |
| pfam | MGYG000003383_10 | MGYG000003383_10_11 | 14962 | 16107 | + | PS_pyruv_trans |
| STP | MGYG000003383_10 | MGYG000003383_10_12 | 16136 | 17164 | + | Nitroreductase |
| CAZyme | MGYG000003383_10 | MGYG000003383_10_13 | 17179 | 18309 | + | GT4 |
| NULL(UNKNOWN) | MGYG000003383_10 | MGYG000003383_10_14 | 18330 | 19490 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003383_10 | MGYG000003383_10_15 | 19495 | 20487 | + | GT2 |
| pfam | MGYG000003383_10 | MGYG000003383_10_16 | 20497 | 21912 | + | Polysacc_synt |
| CAZyme | MGYG000003383_10 | MGYG000003383_10_17 | 22050 | 22907 | + | GT32 |
Gene ID: MGYG000003383_10_6
Type: TC
Location: 6608 - 7936 (+)
Type: TC
Location: 6608 - 7936 (+)
Gene ID: MGYG000003383_10_7
Type: TC
Location: 9006 - 10691 (-)
Type: TC
Location: 9006 - 10691 (-)
Gene ID: MGYG000003383_10_8
Type: TC
Location: 11029 - 12708 (-)
Type: TC
Location: 11029 - 12708 (-)
Gene ID: MGYG000003383_10_9
Type: pfam
Location: 12982 - 13587 (+)
Type: pfam
Location: 12982 - 13587 (+)
Gene ID: MGYG000003383_10_10
Type: CAZyme
Location: 14120 - 14965 (+)
Type: CAZyme
Location: 14120 - 14965 (+)
Gene ID: MGYG000003383_10_11
Type: pfam
Location: 14962 - 16107 (+)
Type: pfam
Location: 14962 - 16107 (+)
Gene ID: MGYG000003383_10_12
Type: STP
Location: 16136 - 17164 (+)
Type: STP
Location: 16136 - 17164 (+)
Gene ID: MGYG000003383_10_13
Type: CAZyme
Location: 17179 - 18309 (+)
Type: CAZyme
Location: 17179 - 18309 (+)
Gene ID: MGYG000003383_10_14
Type:
Location: 18330 - 19490 (+)
Type:
Location: 18330 - 19490 (+)
Gene ID: MGYG000003383_10_15
Type: CAZyme
Location: 19495 - 20487 (+)
Type: CAZyme
Location: 19495 - 20487 (+)
Gene ID: MGYG000003383_10_16
Type: pfam
Location: 20497 - 21912 (+)
Type: pfam
Location: 20497 - 21912 (+)
Gene ID: MGYG000003383_10_17
Type: CAZyme
Location: 22050 - 22907 (+)
Type: CAZyme
Location: 22050 - 22907 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.