Cluster: MGYG000003383_CGC59
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003383
- CGC Family ID: CGCFAM_01691
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_34 | MGYG000003383_34_89 | 131672 | 132847 | - | 3.A.1.144.4 |
| pfam | MGYG000003383_34 | MGYG000003383_34_90 | 133497 | 133772 | - | Glutaredoxin |
| peptidase | MGYG000003383_34 | MGYG000003383_34_91 | 133909 | 135480 | + | C69.UPW |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_92 | 135790 | 137673 | - | GH129 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_93 | 138023 | 139057 | - | GT2 |
| STP | MGYG000003383_34 | MGYG000003383_34_94 | 139458 | 140276 | - | TetR_N |
| TC | MGYG000003383_34 | MGYG000003383_34_95 | 140471 | 141736 | + | 3.A.5.2.2 |
| TC | MGYG000003383_34 | MGYG000003383_34_96 | 142086 | 143369 | + | 1.A.11.1.3 |
| pfam | MGYG000003383_34 | MGYG000003383_34_97 | 143371 | 143709 | + | P-II |
| STP | MGYG000003383_34 | MGYG000003383_34_98 | 143856 | 145688 | + | NTP_transf_2 |
| TC | MGYG000003383_34 | MGYG000003383_34_99 | 145788 | 147197 | - | 2.A.66.1.32 |
Gene ID: MGYG000003383_34_89
Type: TC
Location: 131672 - 132847 (-)
Type: TC
Location: 131672 - 132847 (-)
Gene ID: MGYG000003383_34_90
Type: pfam
Location: 133497 - 133772 (-)
Type: pfam
Location: 133497 - 133772 (-)
Gene ID: MGYG000003383_34_91
Type: peptidase
Location: 133909 - 135480 (+)
Type: peptidase
Location: 133909 - 135480 (+)
Gene ID: MGYG000003383_34_92
Type: CAZyme
Location: 135790 - 137673 (-)
Type: CAZyme
Location: 135790 - 137673 (-)
Gene ID: MGYG000003383_34_93
Type: CAZyme
Location: 138023 - 139057 (-)
Type: CAZyme
Location: 138023 - 139057 (-)
Gene ID: MGYG000003383_34_94
Type: STP
Location: 139458 - 140276 (-)
Type: STP
Location: 139458 - 140276 (-)
Gene ID: MGYG000003383_34_95
Type: TC
Location: 140471 - 141736 (+)
Type: TC
Location: 140471 - 141736 (+)
Gene ID: MGYG000003383_34_96
Type: TC
Location: 142086 - 143369 (+)
Type: TC
Location: 142086 - 143369 (+)
Gene ID: MGYG000003383_34_97
Type: pfam
Location: 143371 - 143709 (+)
Type: pfam
Location: 143371 - 143709 (+)
Gene ID: MGYG000003383_34_98
Type: STP
Location: 143856 - 145688 (+)
Type: STP
Location: 143856 - 145688 (+)
Gene ID: MGYG000003383_34_99
Type: TC
Location: 145788 - 147197 (-)
Type: TC
Location: 145788 - 147197 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.