Cluster: MGYG000003383_CGC57
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003383
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003383_34 | MGYG000003383_34_40 | 58776 | 60959 | + | GH31_3 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_41 | 61011 | 63275 | + | GH36 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_42 | 63424 | 64593 | + | GH26 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_43 | 64937 | 67429 | + | GH36 |
| peptidase | MGYG000003383_34 | MGYG000003383_34_44 | 67884 | 69158 | + | S12.UPW |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_45 | 69393 | 71780 | - | CBM23 | GH26 |
| CAZyme | MGYG000003383_34 | MGYG000003383_34_46 | 72140 | 75991 | - | GH2 |
| TF | MGYG000003383_34 | MGYG000003383_34_47 | 76088 | 77242 | + | HTH_AraC |
| TC | MGYG000003383_34 | MGYG000003383_34_48 | 77260 | 78738 | - | 2.A.3.1.3 |
| STP | MGYG000003383_34 | MGYG000003383_34_49 | 78735 | 79460 | - | TetR_N |
| TC | MGYG000003383_34 | MGYG000003383_34_50 | 79783 | 80484 | + | 3.A.1.125.2 |
| pfam | MGYG000003383_34 | MGYG000003383_34_51 | 80493 | 83999 | + | FtsX | FtsX |
| TC | MGYG000003383_34 | MGYG000003383_34_52 | 84309 | 85859 | + | 2.A.3.1.21 |
Gene ID: MGYG000003383_34_40
Type: CAZyme
Location: 58776 - 60959 (+)
Type: CAZyme
Location: 58776 - 60959 (+)
Gene ID: MGYG000003383_34_41
Type: CAZyme
Location: 61011 - 63275 (+)
Type: CAZyme
Location: 61011 - 63275 (+)
Gene ID: MGYG000003383_34_42
Type: CAZyme
Location: 63424 - 64593 (+)
Type: CAZyme
Location: 63424 - 64593 (+)
Gene ID: MGYG000003383_34_43
Type: CAZyme
Location: 64937 - 67429 (+)
Type: CAZyme
Location: 64937 - 67429 (+)
Gene ID: MGYG000003383_34_44
Type: peptidase
Location: 67884 - 69158 (+)
Type: peptidase
Location: 67884 - 69158 (+)
Gene ID: MGYG000003383_34_45
Type: CAZyme
Location: 69393 - 71780 (-)
Type: CAZyme
Location: 69393 - 71780 (-)
Gene ID: MGYG000003383_34_46
Type: CAZyme
Location: 72140 - 75991 (-)
Type: CAZyme
Location: 72140 - 75991 (-)
Gene ID: MGYG000003383_34_47
Type: TF
Location: 76088 - 77242 (+)
Type: TF
Location: 76088 - 77242 (+)
Gene ID: MGYG000003383_34_48
Type: TC
Location: 77260 - 78738 (-)
Type: TC
Location: 77260 - 78738 (-)
Gene ID: MGYG000003383_34_49
Type: STP
Location: 78735 - 79460 (-)
Type: STP
Location: 78735 - 79460 (-)
Gene ID: MGYG000003383_34_50
Type: TC
Location: 79783 - 80484 (+)
Type: TC
Location: 79783 - 80484 (+)
Gene ID: MGYG000003383_34_51
Type: pfam
Location: 80493 - 83999 (+)
Type: pfam
Location: 80493 - 83999 (+)
Gene ID: MGYG000003383_34_52
Type: TC
Location: 84309 - 85859 (+)
Type: TC
Location: 84309 - 85859 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.