Cluster: MGYG000003383_CGC48
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003383
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_29 | MGYG000003383_29_105 | 119016 | 120359 | - | 3.A.1.1.45 |
| CAZyme | MGYG000003383_29 | MGYG000003383_29_106 | 120406 | 122475 | - | GH31_4 |
| TF | MGYG000003383_29 | MGYG000003383_29_107 | 122733 | 123773 | - | LacI |
| TC | MGYG000003383_29 | MGYG000003383_29_108 | 124058 | 124999 | - | 3.A.1.1.10 |
| TC | MGYG000003383_29 | MGYG000003383_29_109 | 125015 | 126004 | - | 3.A.1.1.10 |
| TF | MGYG000003383_29 | MGYG000003383_29_110 | 126178 | 127227 | - | LacI |
| pfam | MGYG000003383_29 | MGYG000003383_29_111 | 127287 | 130628 | - | DUF5695 |
| TC | MGYG000003383_29 | MGYG000003383_29_112 | 130836 | 132458 | - | 3.A.1.1.10 |
| pfam | MGYG000003383_29 | MGYG000003383_29_113 | 133743 | 134906 | + | AAA_14 | DUF4143 |
| pfam | MGYG000003383_29 | MGYG000003383_29_114 | 135047 | 136576 | - | tRNA-synt_1c | Anticodon_2 |
| CAZyme | MGYG000003383_29 | MGYG000003383_29_115 | 136695 | 137603 | - | GH43_24 |
| TC | MGYG000003383_29 | MGYG000003383_29_116 | 137951 | 138931 | - | 3.A.1.1.10 |
| TC | MGYG000003383_29 | MGYG000003383_29_117 | 138941 | 139840 | - | 3.A.1.1.10 |
| TC | MGYG000003383_29 | MGYG000003383_29_118 | 140075 | 141670 | - | 3.A.1.1.10 |
Gene ID: MGYG000003383_29_105
Type: TC
Location: 119016 - 120359 (-)
Type: TC
Location: 119016 - 120359 (-)
Gene ID: MGYG000003383_29_106
Type: CAZyme
Location: 120406 - 122475 (-)
Type: CAZyme
Location: 120406 - 122475 (-)
Gene ID: MGYG000003383_29_107
Type: TF
Location: 122733 - 123773 (-)
Type: TF
Location: 122733 - 123773 (-)
Gene ID: MGYG000003383_29_108
Type: TC
Location: 124058 - 124999 (-)
Type: TC
Location: 124058 - 124999 (-)
Gene ID: MGYG000003383_29_109
Type: TC
Location: 125015 - 126004 (-)
Type: TC
Location: 125015 - 126004 (-)
Gene ID: MGYG000003383_29_110
Type: TF
Location: 126178 - 127227 (-)
Type: TF
Location: 126178 - 127227 (-)
Gene ID: MGYG000003383_29_111
Type: pfam
Location: 127287 - 130628 (-)
Type: pfam
Location: 127287 - 130628 (-)
Gene ID: MGYG000003383_29_112
Type: TC
Location: 130836 - 132458 (-)
Type: TC
Location: 130836 - 132458 (-)
Gene ID: MGYG000003383_29_113
Type: pfam
Location: 133743 - 134906 (+)
Type: pfam
Location: 133743 - 134906 (+)
Gene ID: MGYG000003383_29_114
Type: pfam
Location: 135047 - 136576 (-)
Type: pfam
Location: 135047 - 136576 (-)
Gene ID: MGYG000003383_29_115
Type: CAZyme
Location: 136695 - 137603 (-)
Type: CAZyme
Location: 136695 - 137603 (-)
Gene ID: MGYG000003383_29_116
Type: TC
Location: 137951 - 138931 (-)
Type: TC
Location: 137951 - 138931 (-)
Gene ID: MGYG000003383_29_117
Type: TC
Location: 138941 - 139840 (-)
Type: TC
Location: 138941 - 139840 (-)
Gene ID: MGYG000003383_29_118
Type: TC
Location: 140075 - 141670 (-)
Type: TC
Location: 140075 - 141670 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.