Cluster: MGYG000003383_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000003383
- CGC Family ID: CGCFAM_08394
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003383_21 | MGYG000003383_21_98 | 135275 | 137446 | - | GH3 |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_99 | 137526 | 141014 | - | GH94 |
| peptidase | MGYG000003383_21 | MGYG000003383_21_100 | 141156 | 142127 | - | S33.UPW |
| TC | MGYG000003383_21 | MGYG000003383_21_101 | 142108 | 143781 | - | 3.A.1.5.8 |
| TC | MGYG000003383_21 | MGYG000003383_21_102 | 143784 | 144734 | - | 3.A.1.5.14 |
| TC | MGYG000003383_21 | MGYG000003383_21_103 | 144740 | 145720 | - | 3.A.1.5.16 |
| TC | MGYG000003383_21 | MGYG000003383_21_104 | 145821 | 147476 | - | 3.A.1.5.30 |
| TF | MGYG000003383_21 | MGYG000003383_21_105 | 147779 | 148912 | + | LacI |
| peptidase | MGYG000003383_21 | MGYG000003383_21_106 | 149181 | 150005 | + | S09.UPW |
| TC | MGYG000003383_21 | MGYG000003383_21_107 | 150126 | 150824 | + | 9.B.27.2.4 |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_108 | 151335 | 153392 | - | GH176 |
| TC | MGYG000003383_21 | MGYG000003383_21_109 | 153474 | 154355 | - | 3.A.1.1.36 |
| TC | MGYG000003383_21 | MGYG000003383_21_110 | 154357 | 155589 | - | 3.A.1.1.36 |
Gene ID: MGYG000003383_21_98
Type: CAZyme
Location: 135275 - 137446 (-)
Type: CAZyme
Location: 135275 - 137446 (-)
Gene ID: MGYG000003383_21_99
Type: CAZyme
Location: 137526 - 141014 (-)
Type: CAZyme
Location: 137526 - 141014 (-)
Gene ID: MGYG000003383_21_100
Type: peptidase
Location: 141156 - 142127 (-)
Type: peptidase
Location: 141156 - 142127 (-)
Gene ID: MGYG000003383_21_101
Type: TC
Location: 142108 - 143781 (-)
Type: TC
Location: 142108 - 143781 (-)
Gene ID: MGYG000003383_21_102
Type: TC
Location: 143784 - 144734 (-)
Type: TC
Location: 143784 - 144734 (-)
Gene ID: MGYG000003383_21_103
Type: TC
Location: 144740 - 145720 (-)
Type: TC
Location: 144740 - 145720 (-)
Gene ID: MGYG000003383_21_104
Type: TC
Location: 145821 - 147476 (-)
Type: TC
Location: 145821 - 147476 (-)
Gene ID: MGYG000003383_21_105
Type: TF
Location: 147779 - 148912 (+)
Type: TF
Location: 147779 - 148912 (+)
Gene ID: MGYG000003383_21_106
Type: peptidase
Location: 149181 - 150005 (+)
Type: peptidase
Location: 149181 - 150005 (+)
Gene ID: MGYG000003383_21_107
Type: TC
Location: 150126 - 150824 (+)
Type: TC
Location: 150126 - 150824 (+)
Gene ID: MGYG000003383_21_108
Type: CAZyme
Location: 151335 - 153392 (-)
Type: CAZyme
Location: 151335 - 153392 (-)
Gene ID: MGYG000003383_21_109
Type: TC
Location: 153474 - 154355 (-)
Type: TC
Location: 153474 - 154355 (-)
Gene ID: MGYG000003383_21_110
Type: TC
Location: 154357 - 155589 (-)
Type: TC
Location: 154357 - 155589 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.