Cluster: MGYG000003383_CGC34
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 8
- Substrate:
- Genome ID: MGYG000003383
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_21 | MGYG000003383_21_63 | 83795 | 84943 | + | 3.A.1.122.14 |
| STP | MGYG000003383_21 | MGYG000003383_21_64 | 85144 | 85818 | - | HD |
| peptidase | MGYG000003383_21 | MGYG000003383_21_65 | 85888 | 86757 | - | C44.UPW |
| TC | MGYG000003383_21 | MGYG000003383_21_66 | 86828 | 89338 | - | 2.A.72.1.3 |
| pfam | MGYG000003383_21 | MGYG000003383_21_67 | 89622 | 90578 | - | TatD_DNase |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_68 | 90688 | 91656 | - | GH43_34 |
| TC | MGYG000003383_21 | MGYG000003383_21_69 | 91784 | 92656 | - | 3.A.1.1.39 |
| TC | MGYG000003383_21 | MGYG000003383_21_70 | 92660 | 93616 | - | 3.A.1.1.7 |
| STP | MGYG000003383_21 | MGYG000003383_21_71 | 93769 | 95019 | - | SBP_bac_1 |
| TF | MGYG000003383_21 | MGYG000003383_21_72 | 95295 | 96341 | - | LacI |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_73 | 96498 | 98576 | + | GH42 |
| TF | MGYG000003383_21 | MGYG000003383_21_74 | 98602 | 99747 | - | LacI |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_75 | 99919 | 102060 | - | GH31_4 |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_76 | 102269 | 103408 | - | GH43_22 |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_77 | 103459 | 104547 | - | GH43_22 |
| TC | MGYG000003383_21 | MGYG000003383_21_78 | 104713 | 105678 | - | 3.A.1.1.29 |
| TC | MGYG000003383_21 | MGYG000003383_21_79 | 105691 | 106668 | - | 3.A.1.1.10 |
| TC | MGYG000003383_21 | MGYG000003383_21_80 | 106774 | 108387 | - | 3.A.1.1.10 |
| TF | MGYG000003383_21 | MGYG000003383_21_81 | 108743 | 109789 | + | LacI |
| TF | MGYG000003383_21 | MGYG000003383_21_82 | 109872 | 110957 | - | LacI |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_83 | 111019 | 114276 | - | CBM67 | GH78 |
| TC | MGYG000003383_21 | MGYG000003383_21_84 | 114425 | 115144 | - | 9.B.28.1.10 |
| NULL(UNKNOWN) | MGYG000003383_21 | MGYG000003383_21_85 | 115340 | 116095 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000003383_21 | MGYG000003383_21_86 | 116335 | 117273 | - | HTH_AraC |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_87 | 117472 | 119628 | - | GH127 |
| CAZyme | MGYG000003383_21 | MGYG000003383_21_88 | 119837 | 122056 | - | GH36 |
| TC | MGYG000003383_21 | MGYG000003383_21_89 | 122259 | 124067 | - | 3.A.1.106.3 |
| TC | MGYG000003383_21 | MGYG000003383_21_90 | 124168 | 126009 | - | 3.A.1.106.3 |
| pfam | MGYG000003383_21 | MGYG000003383_21_91 | 126487 | 127146 | - | HTH_Tnp_2 |
| NULL(UNKNOWN) | MGYG000003383_21 | MGYG000003383_21_92 | 127571 | 127774 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000003383_21 | MGYG000003383_21_93 | 128662 | 130191 | - | 2.A.1.1.42 |
Gene ID: MGYG000003383_21_63
Type: TC
Location: 83795 - 84943 (+)
Type: TC
Location: 83795 - 84943 (+)
Gene ID: MGYG000003383_21_64
Type: STP
Location: 85144 - 85818 (-)
Type: STP
Location: 85144 - 85818 (-)
Gene ID: MGYG000003383_21_65
Type: peptidase
Location: 85888 - 86757 (-)
Type: peptidase
Location: 85888 - 86757 (-)
Gene ID: MGYG000003383_21_66
Type: TC
Location: 86828 - 89338 (-)
Type: TC
Location: 86828 - 89338 (-)
Gene ID: MGYG000003383_21_67
Type: pfam
Location: 89622 - 90578 (-)
Type: pfam
Location: 89622 - 90578 (-)
Gene ID: MGYG000003383_21_68
Type: CAZyme
Location: 90688 - 91656 (-)
Type: CAZyme
Location: 90688 - 91656 (-)
Gene ID: MGYG000003383_21_69
Type: TC
Location: 91784 - 92656 (-)
Type: TC
Location: 91784 - 92656 (-)
Gene ID: MGYG000003383_21_70
Type: TC
Location: 92660 - 93616 (-)
Type: TC
Location: 92660 - 93616 (-)
Gene ID: MGYG000003383_21_71
Type: STP
Location: 93769 - 95019 (-)
Type: STP
Location: 93769 - 95019 (-)
Gene ID: MGYG000003383_21_72
Type: TF
Location: 95295 - 96341 (-)
Type: TF
Location: 95295 - 96341 (-)
Gene ID: MGYG000003383_21_73
Type: CAZyme
Location: 96498 - 98576 (+)
Type: CAZyme
Location: 96498 - 98576 (+)
Gene ID: MGYG000003383_21_74
Type: TF
Location: 98602 - 99747 (-)
Type: TF
Location: 98602 - 99747 (-)
Gene ID: MGYG000003383_21_75
Type: CAZyme
Location: 99919 - 102060 (-)
Type: CAZyme
Location: 99919 - 102060 (-)
Gene ID: MGYG000003383_21_76
Type: CAZyme
Location: 102269 - 103408 (-)
Type: CAZyme
Location: 102269 - 103408 (-)
Gene ID: MGYG000003383_21_77
Type: CAZyme
Location: 103459 - 104547 (-)
Type: CAZyme
Location: 103459 - 104547 (-)
Gene ID: MGYG000003383_21_78
Type: TC
Location: 104713 - 105678 (-)
Type: TC
Location: 104713 - 105678 (-)
Gene ID: MGYG000003383_21_79
Type: TC
Location: 105691 - 106668 (-)
Type: TC
Location: 105691 - 106668 (-)
Gene ID: MGYG000003383_21_80
Type: TC
Location: 106774 - 108387 (-)
Type: TC
Location: 106774 - 108387 (-)
Gene ID: MGYG000003383_21_81
Type: TF
Location: 108743 - 109789 (+)
Type: TF
Location: 108743 - 109789 (+)
Gene ID: MGYG000003383_21_82
Type: TF
Location: 109872 - 110957 (-)
Type: TF
Location: 109872 - 110957 (-)
Gene ID: MGYG000003383_21_83
Type: CAZyme
Location: 111019 - 114276 (-)
Type: CAZyme
Location: 111019 - 114276 (-)
Gene ID: MGYG000003383_21_84
Type: TC
Location: 114425 - 115144 (-)
Type: TC
Location: 114425 - 115144 (-)
Gene ID: MGYG000003383_21_85
Type:
Location: 115340 - 116095 (-)
Type:
Location: 115340 - 116095 (-)
Gene ID: MGYG000003383_21_86
Type: TF
Location: 116335 - 117273 (-)
Type: TF
Location: 116335 - 117273 (-)
Gene ID: MGYG000003383_21_87
Type: CAZyme
Location: 117472 - 119628 (-)
Type: CAZyme
Location: 117472 - 119628 (-)
Gene ID: MGYG000003383_21_88
Type: CAZyme
Location: 119837 - 122056 (-)
Type: CAZyme
Location: 119837 - 122056 (-)
Gene ID: MGYG000003383_21_89
Type: TC
Location: 122259 - 124067 (-)
Type: TC
Location: 122259 - 124067 (-)
Gene ID: MGYG000003383_21_90
Type: TC
Location: 124168 - 126009 (-)
Type: TC
Location: 124168 - 126009 (-)
Gene ID: MGYG000003383_21_91
Type: pfam
Location: 126487 - 127146 (-)
Type: pfam
Location: 126487 - 127146 (-)
Gene ID: MGYG000003383_21_92
Type:
Location: 127571 - 127774 (-)
Type:
Location: 127571 - 127774 (-)
Gene ID: MGYG000003383_21_93
Type: TC
Location: 128662 - 130191 (-)
Type: TC
Location: 128662 - 130191 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.