Cluster: MGYG000003383_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000003383
- CGC Family ID: CGCFAM_01326
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000003383_3 | MGYG000003383_3_53 | 67715 | 70696 | + | 3.A.3.2.21 |
| pfam | MGYG000003383_3 | MGYG000003383_3_54 | 70792 | 71373 | - | dUTPase | DCD_N | DCD_C | DCD |
| peptidase | MGYG000003383_3 | MGYG000003383_3_55 | 71991 | 72731 | + | S09.UPW |
| TC | MGYG000003383_3 | MGYG000003383_3_56 | 72910 | 73962 | + | 2.A.20.1.7 |
| pfam | MGYG000003383_3 | MGYG000003383_3_57 | 73980 | 74603 | + | PhoU_div |
| TC | MGYG000003383_3 | MGYG000003383_3_58 | 74612 | 76687 | - | 2.A.36.3.2 |
| pfam | MGYG000003383_3 | MGYG000003383_3_59 | 76850 | 77281 | + | dCMP_cyt_deam_1 | MafB19-deam |
| CAZyme | MGYG000003383_3 | MGYG000003383_3_60 | 77429 | 79663 | + | GH36 |
| pfam | MGYG000003383_3 | MGYG000003383_3_61 | 79893 | 81050 | - | ROK |
| TC | MGYG000003383_3 | MGYG000003383_3_62 | 81298 | 82590 | + | 3.A.1.1.3 |
| TC | MGYG000003383_3 | MGYG000003383_3_63 | 82607 | 83551 | + | 3.A.1.1.28 |
| TC | MGYG000003383_3 | MGYG000003383_3_64 | 83557 | 84492 | + | 3.A.1.1.28 |
| CAZyme | MGYG000003383_3 | MGYG000003383_3_65 | 84674 | 86494 | + | GH13_31 |
Gene ID: MGYG000003383_3_53
Type: TC
Location: 67715 - 70696 (+)
Type: TC
Location: 67715 - 70696 (+)
Gene ID: MGYG000003383_3_54
Type: pfam
Location: 70792 - 71373 (-)
Type: pfam
Location: 70792 - 71373 (-)
Gene ID: MGYG000003383_3_55
Type: peptidase
Location: 71991 - 72731 (+)
Type: peptidase
Location: 71991 - 72731 (+)
Gene ID: MGYG000003383_3_56
Type: TC
Location: 72910 - 73962 (+)
Type: TC
Location: 72910 - 73962 (+)
Gene ID: MGYG000003383_3_57
Type: pfam
Location: 73980 - 74603 (+)
Type: pfam
Location: 73980 - 74603 (+)
Gene ID: MGYG000003383_3_58
Type: TC
Location: 74612 - 76687 (-)
Type: TC
Location: 74612 - 76687 (-)
Gene ID: MGYG000003383_3_59
Type: pfam
Location: 76850 - 77281 (+)
Type: pfam
Location: 76850 - 77281 (+)
Gene ID: MGYG000003383_3_60
Type: CAZyme
Location: 77429 - 79663 (+)
Type: CAZyme
Location: 77429 - 79663 (+)
Gene ID: MGYG000003383_3_61
Type: pfam
Location: 79893 - 81050 (-)
Type: pfam
Location: 79893 - 81050 (-)
Gene ID: MGYG000003383_3_62
Type: TC
Location: 81298 - 82590 (+)
Type: TC
Location: 81298 - 82590 (+)
Gene ID: MGYG000003383_3_63
Type: TC
Location: 82607 - 83551 (+)
Type: TC
Location: 82607 - 83551 (+)
Gene ID: MGYG000003383_3_64
Type: TC
Location: 83557 - 84492 (+)
Type: TC
Location: 83557 - 84492 (+)
Gene ID: MGYG000003383_3_65
Type: CAZyme
Location: 84674 - 86494 (+)
Type: CAZyme
Location: 84674 - 86494 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003383_3_57 | vegan > omnivore | 1.25963 | 0.00855 |