Cluster: MGYG000003383_CGC22
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000003383
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003383_17 | MGYG000003383_17_164 | 216549 | 217847 | + | GH125 |
| pfam | MGYG000003383_17 | MGYG000003383_17_165 | 217912 | 219144 | + | GlcNAc_2-epim |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_166 | 219214 | 221364 | - | GH20 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_167 | 221502 | 223760 | - | GH3 |
| TF | MGYG000003383_17 | MGYG000003383_17_168 | 223902 | 225005 | - | LacI |
| pfam | MGYG000003383_17 | MGYG000003383_17_169 | 225100 | 225426 | - | DUF202 |
| TC | MGYG000003383_17 | MGYG000003383_17_170 | 225423 | 225794 | - | 9.B.51.1.1 |
| sulfatase | MGYG000003383_17 | MGYG000003383_17_171 | 225775 | 227058 | - | S1_48 |
| sulfatase | MGYG000003383_17 | MGYG000003383_17_172 | 227126 | 228571 | - | S1_11 |
| TC | MGYG000003383_17 | MGYG000003383_17_173 | 228568 | 229434 | - | 3.A.1.1.20 |
| TC | MGYG000003383_17 | MGYG000003383_17_174 | 229434 | 230396 | - | 3.A.1.1.25 |
| STP | MGYG000003383_17 | MGYG000003383_17_175 | 230400 | 231701 | - | SBP_bac_1 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_176 | 231902 | 233185 | - | GH5_18 |
| pfam | MGYG000003383_17 | MGYG000003383_17_177 | 233550 | 234848 | + | MFS_1 |
| pfam | MGYG000003383_17 | MGYG000003383_17_178 | 234914 | 235753 | + | Lactamase_B_2 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_179 | 236031 | 239177 | - | GH38 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_180 | 239403 | 242540 | - | GH38 |
| TC | MGYG000003383_17 | MGYG000003383_17_181 | 242766 | 243593 | - | 3.A.1.1.20 |
| TC | MGYG000003383_17 | MGYG000003383_17_182 | 243586 | 244602 | - | 3.A.1.1.42 |
| TC | MGYG000003383_17 | MGYG000003383_17_183 | 244602 | 245864 | - | 3.A.1.1.7 |
Gene ID: MGYG000003383_17_164
Type: CAZyme
Location: 216549 - 217847 (+)
Type: CAZyme
Location: 216549 - 217847 (+)
Gene ID: MGYG000003383_17_165
Type: pfam
Location: 217912 - 219144 (+)
Type: pfam
Location: 217912 - 219144 (+)
Gene ID: MGYG000003383_17_166
Type: CAZyme
Location: 219214 - 221364 (-)
Type: CAZyme
Location: 219214 - 221364 (-)
Gene ID: MGYG000003383_17_167
Type: CAZyme
Location: 221502 - 223760 (-)
Type: CAZyme
Location: 221502 - 223760 (-)
Gene ID: MGYG000003383_17_168
Type: TF
Location: 223902 - 225005 (-)
Type: TF
Location: 223902 - 225005 (-)
Gene ID: MGYG000003383_17_169
Type: pfam
Location: 225100 - 225426 (-)
Type: pfam
Location: 225100 - 225426 (-)
Gene ID: MGYG000003383_17_170
Type: TC
Location: 225423 - 225794 (-)
Type: TC
Location: 225423 - 225794 (-)
Gene ID: MGYG000003383_17_171
Type: sulfatase
Location: 225775 - 227058 (-)
Type: sulfatase
Location: 225775 - 227058 (-)
Gene ID: MGYG000003383_17_172
Type: sulfatase
Location: 227126 - 228571 (-)
Type: sulfatase
Location: 227126 - 228571 (-)
Gene ID: MGYG000003383_17_173
Type: TC
Location: 228568 - 229434 (-)
Type: TC
Location: 228568 - 229434 (-)
Gene ID: MGYG000003383_17_174
Type: TC
Location: 229434 - 230396 (-)
Type: TC
Location: 229434 - 230396 (-)
Gene ID: MGYG000003383_17_175
Type: STP
Location: 230400 - 231701 (-)
Type: STP
Location: 230400 - 231701 (-)
Gene ID: MGYG000003383_17_176
Type: CAZyme
Location: 231902 - 233185 (-)
Type: CAZyme
Location: 231902 - 233185 (-)
Gene ID: MGYG000003383_17_177
Type: pfam
Location: 233550 - 234848 (+)
Type: pfam
Location: 233550 - 234848 (+)
Gene ID: MGYG000003383_17_178
Type: pfam
Location: 234914 - 235753 (+)
Type: pfam
Location: 234914 - 235753 (+)
Gene ID: MGYG000003383_17_179
Type: CAZyme
Location: 236031 - 239177 (-)
Type: CAZyme
Location: 236031 - 239177 (-)
Gene ID: MGYG000003383_17_180
Type: CAZyme
Location: 239403 - 242540 (-)
Type: CAZyme
Location: 239403 - 242540 (-)
Gene ID: MGYG000003383_17_181
Type: TC
Location: 242766 - 243593 (-)
Type: TC
Location: 242766 - 243593 (-)
Gene ID: MGYG000003383_17_182
Type: TC
Location: 243586 - 244602 (-)
Type: TC
Location: 243586 - 244602 (-)
Gene ID: MGYG000003383_17_183
Type: TC
Location: 244602 - 245864 (-)
Type: TC
Location: 244602 - 245864 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000003383_17_164 | vegan > omnivore | 1.27995 | 0.00855 |
| MGYG000003383_17_164 | vegetarian > omnivore | 2.05271 | 0.00845 |
| MGYG000003383_17_165 | vegan > omnivore | 1.21151 | 0.00855 |
| MGYG000003383_17_165 | vegetarian > omnivore | 1.15614 | 0.00845 |