Cluster: MGYG000003383_CGC20
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000003383
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003383_17 | MGYG000003383_17_137 | 178141 | 180915 | - | GH2 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_138 | 181040 | 182344 | - | GH29 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_139 | 182395 | 184416 | - | GH20 |
| TF | MGYG000003383_17 | MGYG000003383_17_140 | 184595 | 185746 | - | MarR |
| TC | MGYG000003383_17 | MGYG000003383_17_141 | 185872 | 186705 | - | 3.A.1.1.20 |
| TC | MGYG000003383_17 | MGYG000003383_17_142 | 186705 | 187667 | - | 3.A.1.1.20 |
| STP | MGYG000003383_17 | MGYG000003383_17_143 | 187664 | 188953 | - | SBP_bac_1 |
| peptidase | MGYG000003383_17 | MGYG000003383_17_144 | 189444 | 190379 | - | S09.UPC |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_145 | 190453 | 192225 | - | GH18 |
| CAZyme | MGYG000003383_17 | MGYG000003383_17_146 | 192894 | 194150 | - | CE9 |
Gene ID: MGYG000003383_17_137
Type: CAZyme
Location: 178141 - 180915 (-)
Type: CAZyme
Location: 178141 - 180915 (-)
Gene ID: MGYG000003383_17_138
Type: CAZyme
Location: 181040 - 182344 (-)
Type: CAZyme
Location: 181040 - 182344 (-)
Gene ID: MGYG000003383_17_139
Type: CAZyme
Location: 182395 - 184416 (-)
Type: CAZyme
Location: 182395 - 184416 (-)
Gene ID: MGYG000003383_17_140
Type: TF
Location: 184595 - 185746 (-)
Type: TF
Location: 184595 - 185746 (-)
Gene ID: MGYG000003383_17_141
Type: TC
Location: 185872 - 186705 (-)
Type: TC
Location: 185872 - 186705 (-)
Gene ID: MGYG000003383_17_142
Type: TC
Location: 186705 - 187667 (-)
Type: TC
Location: 186705 - 187667 (-)
Gene ID: MGYG000003383_17_143
Type: STP
Location: 187664 - 188953 (-)
Type: STP
Location: 187664 - 188953 (-)
Gene ID: MGYG000003383_17_144
Type: peptidase
Location: 189444 - 190379 (-)
Type: peptidase
Location: 189444 - 190379 (-)
Gene ID: MGYG000003383_17_145
Type: CAZyme
Location: 190453 - 192225 (-)
Type: CAZyme
Location: 190453 - 192225 (-)
Gene ID: MGYG000003383_17_146
Type: CAZyme
Location: 192894 - 194150 (-)
Type: CAZyme
Location: 192894 - 194150 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Bifidobacteriaceae
Genus
Bifidobacterium
Species
Bifidobacterium scardovii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.