Cluster: MGYG000003119_CGC6
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate: pectin/alpha-glucan
- Genome ID: MGYG000003119
- CGC Family ID: CGCFAM_00025
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000003119_4 | MGYG000003119_4_41 | 39125 | 40246 | + | GT4 |
| CAZyme | MGYG000003119_4 | MGYG000003119_4_42 | 40407 | 42587 | + | GH97 |
| TC | MGYG000003119_4 | MGYG000003119_4_43 | 42868 | 45795 | + | 1.B.14.6.1 |
| TC | MGYG000003119_4 | MGYG000003119_4_44 | 45808 | 47430 | + | 8.A.46.1.1 |
| pfam | MGYG000003119_4 | MGYG000003119_4_45 | 47443 | 48486 | + | SusE |
| CAZyme | MGYG000003119_4 | MGYG000003119_4_46 | 48549 | 49958 | + | GH13_7 |
| NULL(UNKNOWN) | MGYG000003119_4 | MGYG000003119_4_47 | 50025 | 50555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000003119_4 | MGYG000003119_4_48 | 50562 | 51068 | - | GH73 |
| TC | MGYG000003119_4 | MGYG000003119_4_49 | 51202 | 51366 | - | 1.E.19.6.2 |
Gene ID: MGYG000003119_4_41
Type: CAZyme
Location: 39125 - 40246 (+)
Type: CAZyme
Location: 39125 - 40246 (+)
Gene ID: MGYG000003119_4_42
Type: CAZyme
Location: 40407 - 42587 (+)
Type: CAZyme
Location: 40407 - 42587 (+)
Gene ID: MGYG000003119_4_43
Type: TC
Location: 42868 - 45795 (+)
Type: TC
Location: 42868 - 45795 (+)
Gene ID: MGYG000003119_4_44
Type: TC
Location: 45808 - 47430 (+)
Type: TC
Location: 45808 - 47430 (+)
Gene ID: MGYG000003119_4_45
Type: pfam
Location: 47443 - 48486 (+)
Type: pfam
Location: 47443 - 48486 (+)
Gene ID: MGYG000003119_4_46
Type: CAZyme
Location: 48549 - 49958 (+)
Type: CAZyme
Location: 48549 - 49958 (+)
Gene ID: MGYG000003119_4_47
Type:
Location: 50025 - 50555 (-)
Type:
Location: 50025 - 50555 (-)
Gene ID: MGYG000003119_4_48
Type: CAZyme
Location: 50562 - 51068 (-)
Type: CAZyme
Location: 50562 - 51068 (-)
Gene ID: MGYG000003119_4_49
Type: TC
Location: 51202 - 51366 (-)
Type: TC
Location: 51202 - 51366 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Flavobacteriales
Family
Flavobacteriaceae
Genus
Capnocytophaga
Species
Capnocytophaga ochracea
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.