Cluster: MGYG000002889_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 11
- Substrate:
- Genome ID: MGYG000002889
- CGC Family ID: CGCFAM_00698
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002889_10 | MGYG000002889_10_54 | 54947 | 56005 | + | GT9 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_55 | 55993 | 56961 | + | GT9 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_56 | 56958 | 58136 | + | GT4 |
| TC | MGYG000002889_10 | MGYG000002889_10_57 | 58126 | 59382 | + | 9.B.67.5.1 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_58 | 59382 | 60389 | + | GT2 |
| NULL(UNKNOWN) | MGYG000002889_10 | MGYG000002889_10_59 | 60372 | 61349 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_60 | 61662 | 62804 | + | GT4 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_61 | 62846 | 63955 | + | GT9 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_62 | 63952 | 64950 | + | GT2 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_63 | 65023 | 66099 | + | GT9 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_64 | 66092 | 67225 | + | GT4 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_65 | 67311 | 68585 | + | GT30 |
| CAZyme | MGYG000002889_10 | MGYG000002889_10_66 | 68585 | 69361 | + | GT2 |
Gene ID: MGYG000002889_10_54
Type: CAZyme
Location: 54947 - 56005 (+)
Type: CAZyme
Location: 54947 - 56005 (+)
Gene ID: MGYG000002889_10_55
Type: CAZyme
Location: 55993 - 56961 (+)
Type: CAZyme
Location: 55993 - 56961 (+)
Gene ID: MGYG000002889_10_56
Type: CAZyme
Location: 56958 - 58136 (+)
Type: CAZyme
Location: 56958 - 58136 (+)
Gene ID: MGYG000002889_10_57
Type: TC
Location: 58126 - 59382 (+)
Type: TC
Location: 58126 - 59382 (+)
Gene ID: MGYG000002889_10_58
Type: CAZyme
Location: 59382 - 60389 (+)
Type: CAZyme
Location: 59382 - 60389 (+)
Gene ID: MGYG000002889_10_59
Type:
Location: 60372 - 61349 (-)
Type:
Location: 60372 - 61349 (-)
Gene ID: MGYG000002889_10_60
Type: CAZyme
Location: 61662 - 62804 (+)
Type: CAZyme
Location: 61662 - 62804 (+)
Gene ID: MGYG000002889_10_61
Type: CAZyme
Location: 62846 - 63955 (+)
Type: CAZyme
Location: 62846 - 63955 (+)
Gene ID: MGYG000002889_10_62
Type: CAZyme
Location: 63952 - 64950 (+)
Type: CAZyme
Location: 63952 - 64950 (+)
Gene ID: MGYG000002889_10_63
Type: CAZyme
Location: 65023 - 66099 (+)
Type: CAZyme
Location: 65023 - 66099 (+)
Gene ID: MGYG000002889_10_64
Type: CAZyme
Location: 66092 - 67225 (+)
Type: CAZyme
Location: 66092 - 67225 (+)
Gene ID: MGYG000002889_10_65
Type: CAZyme
Location: 67311 - 68585 (+)
Type: CAZyme
Location: 67311 - 68585 (+)
Gene ID: MGYG000002889_10_66
Type: CAZyme
Location: 68585 - 69361 (+)
Type: CAZyme
Location: 68585 - 69361 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea alvi
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.