Cluster: MGYG000002787_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: MGYG000002787
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002787_2 | MGYG000002787_2_57 | 64574 | 66127 | - | CBM91 | GH43_12 |
| CAZyme | MGYG000002787_2 | MGYG000002787_2_58 | 66132 | 68954 | - | CBM67 | GH78 |
| CAZyme | MGYG000002787_2 | MGYG000002787_2_59 | 68976 | 70679 | - | GH3 |
| TF | MGYG000002787_2 | MGYG000002787_2_60 | 70903 | 71904 | + | HTH_AraC |
| TF | MGYG000002787_2 | MGYG000002787_2_61 | 71958 | 72914 | - | HTH_AraC |
| CAZyme | MGYG000002787_2 | MGYG000002787_2_62 | 73041 | 75446 | + | GH2 |
| pfam | MGYG000002787_2 | MGYG000002787_2_63 | 75581 | 76813 | + | Sugar_tr | MFS_1 |
| NULL(UNKNOWN) | MGYG000002787_2 | MGYG000002787_2_64 | 76892 | 77260 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002787_2 | MGYG000002787_2_65 | 77444 | 78475 | + | 8.A.5.1.3 |
| TF | MGYG000002787_2 | MGYG000002787_2_66 | 78811 | 79806 | + | LacI |
| pfam | MGYG000002787_2 | MGYG000002787_2_67 | 79932 | 80960 | + | Aldose_epim |
| TC | MGYG000002787_2 | MGYG000002787_2_68 | 81320 | 83278 | + | 2.A.2.2.1 |
| CAZyme | MGYG000002787_2 | MGYG000002787_2_69 | 83369 | 85585 | + | GH36 |
| pfam | MGYG000002787_2 | MGYG000002787_2_70 | 85869 | 86828 | - | Bgal_small_N |
| CAZyme | MGYG000002787_2 | MGYG000002787_2_71 | 86812 | 88692 | - | GH2 |
Gene ID: MGYG000002787_2_57
Type: CAZyme
Location: 64574 - 66127 (-)
Type: CAZyme
Location: 64574 - 66127 (-)
Gene ID: MGYG000002787_2_58
Type: CAZyme
Location: 66132 - 68954 (-)
Type: CAZyme
Location: 66132 - 68954 (-)
Gene ID: MGYG000002787_2_59
Type: CAZyme
Location: 68976 - 70679 (-)
Type: CAZyme
Location: 68976 - 70679 (-)
Gene ID: MGYG000002787_2_60
Type: TF
Location: 70903 - 71904 (+)
Type: TF
Location: 70903 - 71904 (+)
Gene ID: MGYG000002787_2_61
Type: TF
Location: 71958 - 72914 (-)
Type: TF
Location: 71958 - 72914 (-)
Gene ID: MGYG000002787_2_62
Type: CAZyme
Location: 73041 - 75446 (+)
Type: CAZyme
Location: 73041 - 75446 (+)
Gene ID: MGYG000002787_2_63
Type: pfam
Location: 75581 - 76813 (+)
Type: pfam
Location: 75581 - 76813 (+)
Gene ID: MGYG000002787_2_64
Type:
Location: 76892 - 77260 (-)
Type:
Location: 76892 - 77260 (-)
Gene ID: MGYG000002787_2_65
Type: TC
Location: 77444 - 78475 (+)
Type: TC
Location: 77444 - 78475 (+)
Gene ID: MGYG000002787_2_66
Type: TF
Location: 78811 - 79806 (+)
Type: TF
Location: 78811 - 79806 (+)
Gene ID: MGYG000002787_2_67
Type: pfam
Location: 79932 - 80960 (+)
Type: pfam
Location: 79932 - 80960 (+)
Gene ID: MGYG000002787_2_68
Type: TC
Location: 81320 - 83278 (+)
Type: TC
Location: 81320 - 83278 (+)
Gene ID: MGYG000002787_2_69
Type: CAZyme
Location: 83369 - 85585 (+)
Type: CAZyme
Location: 83369 - 85585 (+)
Gene ID: MGYG000002787_2_70
Type: pfam
Location: 85869 - 86828 (-)
Type: pfam
Location: 85869 - 86828 (-)
Gene ID: MGYG000002787_2_71
Type: CAZyme
Location: 86812 - 88692 (-)
Type: CAZyme
Location: 86812 - 88692 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Species
Lactiplantibacillus pentosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.