Cluster: MGYG000002787_CGC1
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000002787
- CGC Family ID: CGCFAM_08876
- Continent: North America
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002787_1 | MGYG000002787_1_9 | 12385 | 14058 | - | GH13_31 |
| TC | MGYG000002787_1 | MGYG000002787_1_10 | 14608 | 16008 | + | 2.A.35.1.3 |
| pfam | MGYG000002787_1 | MGYG000002787_1_11 | 16205 | 17119 | + | ADH_zinc_N | ADH_N |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_12 | 17623 | 19299 | - | GH13_31 |
| TF | MGYG000002787_1 | MGYG000002787_1_13 | 19319 | 20299 | - | LacI |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_14 | 20280 | 21791 | - | GH32 |
| TC | MGYG000002787_1 | MGYG000002787_1_15 | 22038 | 23993 | + | 4.A.1.2.12 |
| pfam | MGYG000002787_1 | MGYG000002787_1_16 | 24127 | 24993 | + | ROK |
| pfam | MGYG000002787_1 | MGYG000002787_1_17 | 25192 | 25377 | - | DUF6290 |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_18 | 26461 | 29307 | + | CBM32 | GH85 |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_19 | 29822 | 32092 | - | GH65 |
| TC | MGYG000002787_1 | MGYG000002787_1_20 | 32119 | 33225 | - | 3.A.1.1.20 |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_21 | 33327 | 34649 | - | GH13 |
| NULL(UNKNOWN) | MGYG000002787_1 | MGYG000002787_1_22 | 34683 | 35513 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002787_1 | MGYG000002787_1_23 | 35541 | 36425 | - | 3.A.1.1.26 |
| TC | MGYG000002787_1 | MGYG000002787_1_24 | 36430 | 37719 | - | 3.A.1.1.26 |
| TC | MGYG000002787_1 | MGYG000002787_1_25 | 37829 | 39085 | - | 3.A.1.1.26 |
| CAZyme | MGYG000002787_1 | MGYG000002787_1_26 | 39325 | 41013 | - | GH13_31 |
Gene ID: MGYG000002787_1_9
Type: CAZyme
Location: 12385 - 14058 (-)
Type: CAZyme
Location: 12385 - 14058 (-)
Gene ID: MGYG000002787_1_10
Type: TC
Location: 14608 - 16008 (+)
Type: TC
Location: 14608 - 16008 (+)
Gene ID: MGYG000002787_1_11
Type: pfam
Location: 16205 - 17119 (+)
Type: pfam
Location: 16205 - 17119 (+)
Gene ID: MGYG000002787_1_12
Type: CAZyme
Location: 17623 - 19299 (-)
Type: CAZyme
Location: 17623 - 19299 (-)
Gene ID: MGYG000002787_1_13
Type: TF
Location: 19319 - 20299 (-)
Type: TF
Location: 19319 - 20299 (-)
Gene ID: MGYG000002787_1_14
Type: CAZyme
Location: 20280 - 21791 (-)
Type: CAZyme
Location: 20280 - 21791 (-)
Gene ID: MGYG000002787_1_15
Type: TC
Location: 22038 - 23993 (+)
Type: TC
Location: 22038 - 23993 (+)
Gene ID: MGYG000002787_1_16
Type: pfam
Location: 24127 - 24993 (+)
Type: pfam
Location: 24127 - 24993 (+)
Gene ID: MGYG000002787_1_17
Type: pfam
Location: 25192 - 25377 (-)
Type: pfam
Location: 25192 - 25377 (-)
Gene ID: MGYG000002787_1_18
Type: CAZyme
Location: 26461 - 29307 (+)
Type: CAZyme
Location: 26461 - 29307 (+)
Gene ID: MGYG000002787_1_19
Type: CAZyme
Location: 29822 - 32092 (-)
Type: CAZyme
Location: 29822 - 32092 (-)
Gene ID: MGYG000002787_1_20
Type: TC
Location: 32119 - 33225 (-)
Type: TC
Location: 32119 - 33225 (-)
Gene ID: MGYG000002787_1_21
Type: CAZyme
Location: 33327 - 34649 (-)
Type: CAZyme
Location: 33327 - 34649 (-)
Gene ID: MGYG000002787_1_22
Type:
Location: 34683 - 35513 (-)
Type:
Location: 34683 - 35513 (-)
Gene ID: MGYG000002787_1_23
Type: TC
Location: 35541 - 36425 (-)
Type: TC
Location: 35541 - 36425 (-)
Gene ID: MGYG000002787_1_24
Type: TC
Location: 36430 - 37719 (-)
Type: TC
Location: 36430 - 37719 (-)
Gene ID: MGYG000002787_1_25
Type: TC
Location: 37829 - 39085 (-)
Type: TC
Location: 37829 - 39085 (-)
Gene ID: MGYG000002787_1_26
Type: CAZyme
Location: 39325 - 41013 (-)
Type: CAZyme
Location: 39325 - 41013 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactiplantibacillus
Species
Lactiplantibacillus pentosus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.