Cluster: MGYG000002560_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_01268
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_1 | MGYG000002560_1_323 | 415044 | 417266 | + | GH92 |
| TF | MGYG000002560_1 | MGYG000002560_1_324 | 417288 | 417863 | + | GerE |
| STP | MGYG000002560_1 | MGYG000002560_1_325 | 417893 | 418888 | + | FecR |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_326 | 418908 | 421187 | + | GH92 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_327 | 421394 | 423706 | + | GH92 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_328 | 423789 | 424694 | - | GT32 |
| TC | MGYG000002560_1 | MGYG000002560_1_329 | 425049 | 428450 | + | 1.B.14.6.2 |
| TC | MGYG000002560_1 | MGYG000002560_1_330 | 428474 | 430246 | + | 8.A.46.2.1 |
| pfam | MGYG000002560_1 | MGYG000002560_1_331 | 430291 | 431136 | + | Exo_endo_phos |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_332 | 431351 | 433369 | + | GH97 |
| pfam | MGYG000002560_1 | MGYG000002560_1_333 | 433573 | 434871 | + | BT1 | MFS_1 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_334 | 434900 | 435901 | + | GH130_2 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_335 | 436485 | 437720 | + | GH109 |
Gene ID: MGYG000002560_1_323
Type: CAZyme
Location: 415044 - 417266 (+)
Type: CAZyme
Location: 415044 - 417266 (+)
Gene ID: MGYG000002560_1_324
Type: TF
Location: 417288 - 417863 (+)
Type: TF
Location: 417288 - 417863 (+)
Gene ID: MGYG000002560_1_325
Type: STP
Location: 417893 - 418888 (+)
Type: STP
Location: 417893 - 418888 (+)
Gene ID: MGYG000002560_1_326
Type: CAZyme
Location: 418908 - 421187 (+)
Type: CAZyme
Location: 418908 - 421187 (+)
Gene ID: MGYG000002560_1_327
Type: CAZyme
Location: 421394 - 423706 (+)
Type: CAZyme
Location: 421394 - 423706 (+)
Gene ID: MGYG000002560_1_328
Type: CAZyme
Location: 423789 - 424694 (-)
Type: CAZyme
Location: 423789 - 424694 (-)
Gene ID: MGYG000002560_1_329
Type: TC
Location: 425049 - 428450 (+)
Type: TC
Location: 425049 - 428450 (+)
Gene ID: MGYG000002560_1_330
Type: TC
Location: 428474 - 430246 (+)
Type: TC
Location: 428474 - 430246 (+)
Gene ID: MGYG000002560_1_331
Type: pfam
Location: 430291 - 431136 (+)
Type: pfam
Location: 430291 - 431136 (+)
Gene ID: MGYG000002560_1_332
Type: CAZyme
Location: 431351 - 433369 (+)
Type: CAZyme
Location: 431351 - 433369 (+)
Gene ID: MGYG000002560_1_333
Type: pfam
Location: 433573 - 434871 (+)
Type: pfam
Location: 433573 - 434871 (+)
Gene ID: MGYG000002560_1_334
Type: CAZyme
Location: 434900 - 435901 (+)
Type: CAZyme
Location: 434900 - 435901 (+)
Gene ID: MGYG000002560_1_335
Type: CAZyme
Location: 436485 - 437720 (+)
Type: CAZyme
Location: 436485 - 437720 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.