Cluster: MGYG000002560_CGC7
🧬 Cluster Details
- Gene Count: 28
- CAZyme Count: 10
- Substrate:
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_03628
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000002560_1 | MGYG000002560_1_273 | 329003 | 331375 | - | 1.B.14.6.5 |
| TC | MGYG000002560_1 | MGYG000002560_1_274 | 331580 | 332629 | + | 9.B.97.3.1 |
| pfam | MGYG000002560_1 | MGYG000002560_1_275 | 332638 | 333837 | + | DUF418 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_276 | 333940 | 336138 | + | GH92 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_277 | 336173 | 338455 | + | GH92 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_278 | 338575 | 340290 | + | GH110 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_279 | 340320 | 342719 | + | GH95 |
| TF | MGYG000002560_1 | MGYG000002560_1_280 | 342998 | 347032 | + | HTH_AraC |
| NULL(UNKNOWN) | MGYG000002560_1 | MGYG000002560_1_281 | 347054 | 347206 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_282 | 347240 | 349264 | + | GH36 |
| TC | MGYG000002560_1 | MGYG000002560_1_283 | 349306 | 352368 | + | 1.B.14.6.1 |
| TC | MGYG000002560_1 | MGYG000002560_1_284 | 352395 | 354041 | + | 8.A.46.1.3 |
| sulfatase | MGYG000002560_1 | MGYG000002560_1_285 | 354638 | 355657 | + | S1_22 |
| TC | MGYG000002560_1 | MGYG000002560_1_286 | 355895 | 358915 | + | 1.B.14.6.1 |
| pfam | MGYG000002560_1 | MGYG000002560_1_287 | 358938 | 360605 | + | SusD_RagB | SusD-like_3 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_288 | 360621 | 363563 | + | CBM32 | GH2 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_289 | 363574 | 365526 | + | CE20 | CE20 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_290 | 365644 | 367800 | + | GH36 |
| TF | MGYG000002560_1 | MGYG000002560_1_291 | 368167 | 372129 | - | HTH_AraC |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_292 | 372297 | 374273 | - | GH97 |
| NULL(UNKNOWN) | MGYG000002560_1 | MGYG000002560_1_293 | 374281 | 375762 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MGYG000002560_1 | MGYG000002560_1_294 | 375766 | 377775 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000002560_1 | MGYG000002560_1_295 | 377868 | 379502 | - | 8.A.46.1.5 |
| TC | MGYG000002560_1 | MGYG000002560_1_296 | 379531 | 382632 | - | 1.B.14.6.1 |
| CAZyme | MGYG000002560_1 | MGYG000002560_1_297 | 382665 | 384593 | - | GH97 |
| TF | MGYG000002560_1 | MGYG000002560_1_298 | 384984 | 385577 | + | GerE |
| STP | MGYG000002560_1 | MGYG000002560_1_299 | 385638 | 386639 | + | FecR |
| TC | MGYG000002560_1 | MGYG000002560_1_300 | 386725 | 390102 | + | 1.B.14.6.1 |
Gene ID: MGYG000002560_1_273
Type: TC
Location: 329003 - 331375 (-)
Type: TC
Location: 329003 - 331375 (-)
Gene ID: MGYG000002560_1_274
Type: TC
Location: 331580 - 332629 (+)
Type: TC
Location: 331580 - 332629 (+)
Gene ID: MGYG000002560_1_275
Type: pfam
Location: 332638 - 333837 (+)
Type: pfam
Location: 332638 - 333837 (+)
Gene ID: MGYG000002560_1_276
Type: CAZyme
Location: 333940 - 336138 (+)
Type: CAZyme
Location: 333940 - 336138 (+)
Gene ID: MGYG000002560_1_277
Type: CAZyme
Location: 336173 - 338455 (+)
Type: CAZyme
Location: 336173 - 338455 (+)
Gene ID: MGYG000002560_1_278
Type: CAZyme
Location: 338575 - 340290 (+)
Type: CAZyme
Location: 338575 - 340290 (+)
Gene ID: MGYG000002560_1_279
Type: CAZyme
Location: 340320 - 342719 (+)
Type: CAZyme
Location: 340320 - 342719 (+)
Gene ID: MGYG000002560_1_280
Type: TF
Location: 342998 - 347032 (+)
Type: TF
Location: 342998 - 347032 (+)
Gene ID: MGYG000002560_1_281
Type:
Location: 347054 - 347206 (+)
Type:
Location: 347054 - 347206 (+)
Gene ID: MGYG000002560_1_282
Type: CAZyme
Location: 347240 - 349264 (+)
Type: CAZyme
Location: 347240 - 349264 (+)
Gene ID: MGYG000002560_1_283
Type: TC
Location: 349306 - 352368 (+)
Type: TC
Location: 349306 - 352368 (+)
Gene ID: MGYG000002560_1_284
Type: TC
Location: 352395 - 354041 (+)
Type: TC
Location: 352395 - 354041 (+)
Gene ID: MGYG000002560_1_285
Type: sulfatase
Location: 354638 - 355657 (+)
Type: sulfatase
Location: 354638 - 355657 (+)
Gene ID: MGYG000002560_1_286
Type: TC
Location: 355895 - 358915 (+)
Type: TC
Location: 355895 - 358915 (+)
Gene ID: MGYG000002560_1_287
Type: pfam
Location: 358938 - 360605 (+)
Type: pfam
Location: 358938 - 360605 (+)
Gene ID: MGYG000002560_1_288
Type: CAZyme
Location: 360621 - 363563 (+)
Type: CAZyme
Location: 360621 - 363563 (+)
Gene ID: MGYG000002560_1_289
Type: CAZyme
Location: 363574 - 365526 (+)
Type: CAZyme
Location: 363574 - 365526 (+)
Gene ID: MGYG000002560_1_290
Type: CAZyme
Location: 365644 - 367800 (+)
Type: CAZyme
Location: 365644 - 367800 (+)
Gene ID: MGYG000002560_1_291
Type: TF
Location: 368167 - 372129 (-)
Type: TF
Location: 368167 - 372129 (-)
Gene ID: MGYG000002560_1_292
Type: CAZyme
Location: 372297 - 374273 (-)
Type: CAZyme
Location: 372297 - 374273 (-)
Gene ID: MGYG000002560_1_293
Type:
Location: 374281 - 375762 (-)
Type:
Location: 374281 - 375762 (-)
Gene ID: MGYG000002560_1_294
Type:
Location: 375766 - 377775 (-)
Type:
Location: 375766 - 377775 (-)
Gene ID: MGYG000002560_1_295
Type: TC
Location: 377868 - 379502 (-)
Type: TC
Location: 377868 - 379502 (-)
Gene ID: MGYG000002560_1_296
Type: TC
Location: 379531 - 382632 (-)
Type: TC
Location: 379531 - 382632 (-)
Gene ID: MGYG000002560_1_297
Type: CAZyme
Location: 382665 - 384593 (-)
Type: CAZyme
Location: 382665 - 384593 (-)
Gene ID: MGYG000002560_1_298
Type: TF
Location: 384984 - 385577 (+)
Type: TF
Location: 384984 - 385577 (+)
Gene ID: MGYG000002560_1_299
Type: STP
Location: 385638 - 386639 (+)
Type: STP
Location: 385638 - 386639 (+)
Gene ID: MGYG000002560_1_300
Type: TC
Location: 386725 - 390102 (+)
Type: TC
Location: 386725 - 390102 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.