Cluster: MGYG000002560_CGC60
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate: xylan
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_00238
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_25 | MGYG000002560_25_26 | 35960 | 37273 | - | CBM6 | GH43_29 |
| CAZyme | MGYG000002560_25 | MGYG000002560_25_27 | 37319 | 40039 | - | CE6 | GH97 |
| CAZyme | MGYG000002560_25 | MGYG000002560_25_28 | 40055 | 42547 | - | CBM6 | CE1 | GH43_29 |
| CAZyme | MGYG000002560_25 | MGYG000002560_25_29 | 42578 | 44731 | - | CBM91 | GH43_10 |
| CAZyme | MGYG000002560_25 | MGYG000002560_25_30 | 45011 | 46696 | - | GH10 |
| pfam | MGYG000002560_25 | MGYG000002560_25_31 | 46756 | 47766 | - | BT_3987-like_N | DUF5627 |
| pfam | MGYG000002560_25 | MGYG000002560_25_32 | 47803 | 49575 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000002560_25 | MGYG000002560_25_33 | 49597 | 52437 | - | 1.B.14.6.1 |
| pfam | MGYG000002560_25 | MGYG000002560_25_34 | 52474 | 54345 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000002560_25 | MGYG000002560_25_35 | 54358 | 57519 | - | 1.B.14.6.1 |
| CAZyme | MGYG000002560_25 | MGYG000002560_25_36 | 57645 | 59384 | - | CBM91 | GH43_12 |
Gene ID: MGYG000002560_25_26
Type: CAZyme
Location: 35960 - 37273 (-)
Type: CAZyme
Location: 35960 - 37273 (-)
Gene ID: MGYG000002560_25_27
Type: CAZyme
Location: 37319 - 40039 (-)
Type: CAZyme
Location: 37319 - 40039 (-)
Gene ID: MGYG000002560_25_28
Type: CAZyme
Location: 40055 - 42547 (-)
Type: CAZyme
Location: 40055 - 42547 (-)
Gene ID: MGYG000002560_25_29
Type: CAZyme
Location: 42578 - 44731 (-)
Type: CAZyme
Location: 42578 - 44731 (-)
Gene ID: MGYG000002560_25_30
Type: CAZyme
Location: 45011 - 46696 (-)
Type: CAZyme
Location: 45011 - 46696 (-)
Gene ID: MGYG000002560_25_31
Type: pfam
Location: 46756 - 47766 (-)
Type: pfam
Location: 46756 - 47766 (-)
Gene ID: MGYG000002560_25_32
Type: pfam
Location: 47803 - 49575 (-)
Type: pfam
Location: 47803 - 49575 (-)
Gene ID: MGYG000002560_25_33
Type: TC
Location: 49597 - 52437 (-)
Type: TC
Location: 49597 - 52437 (-)
Gene ID: MGYG000002560_25_34
Type: pfam
Location: 52474 - 54345 (-)
Type: pfam
Location: 52474 - 54345 (-)
Gene ID: MGYG000002560_25_35
Type: TC
Location: 54358 - 57519 (-)
Type: TC
Location: 54358 - 57519 (-)
Gene ID: MGYG000002560_25_36
Type: CAZyme
Location: 57645 - 59384 (-)
Type: CAZyme
Location: 57645 - 59384 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.