Cluster: MGYG000002560_CGC44
🧬 Cluster Details
- Gene Count: 31
- CAZyme Count: 13
- Substrate:
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_05200
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_12 | MGYG000002560_12_51 | 57278 | 59005 | - | CE12 | CE8 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_52 | 59012 | 60151 | - | CE19 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_53 | 60166 | 61779 | - | PL10_2 |
| pfam | MGYG000002560_12 | MGYG000002560_12_54 | 61967 | 62458 | + | Cupin_2 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_55 | 62581 | 64581 | - | CE19 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_56 | 64599 | 66983 | - | GH31_9 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_57 | 67004 | 70033 | - | GH2 |
| TC | MGYG000002560_12 | MGYG000002560_12_58 | 70121 | 71809 | - | 8.A.46.1.6 |
| TC | MGYG000002560_12 | MGYG000002560_12_59 | 71828 | 75124 | - | 1.B.14.6.1 |
| STP | MGYG000002560_12 | MGYG000002560_12_60 | 75180 | 76112 | - | FecR |
| STP | MGYG000002560_12 | MGYG000002560_12_61 | 76181 | 76744 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_62 | 76818 | 78371 | - | CE8 |
| NULL(UNKNOWN) | MGYG000002560_12 | MGYG000002560_12_63 | 78405 | 80954 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_64 | 81060 | 83048 | - | GH33 |
| NULL(UNKNOWN) | MGYG000002560_12 | MGYG000002560_12_65 | 83980 | 84549 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000002560_12 | MGYG000002560_12_66 | 84689 | 86857 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000002560_12 | MGYG000002560_12_67 | 86870 | 90091 | - | 1.B.14.6.1 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_68 | 90311 | 91840 | - | PL1_2 |
| pfam | MGYG000002560_12 | MGYG000002560_12_69 | 91858 | 93483 | - | DUF5123 |
| TC | MGYG000002560_12 | MGYG000002560_12_70 | 93510 | 95444 | - | 8.A.46.1.2 |
| TC | MGYG000002560_12 | MGYG000002560_12_71 | 95466 | 98714 | - | 1.B.14.6.1 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_72 | 98898 | 99848 | - | CE8 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_73 | 99864 | 101093 | - | GH105 |
| TC | MGYG000002560_12 | MGYG000002560_12_74 | 101384 | 102781 | + | 4.A.5.1.4 |
| pfam | MGYG000002560_12 | MGYG000002560_12_75 | 102813 | 103736 | + | KduI |
| TC | MGYG000002560_12 | MGYG000002560_12_76 | 104127 | 105602 | + | 2.A.1.14.1 |
| peptidase | MGYG000002560_12 | MGYG000002560_12_77 | 105700 | 107220 | - | M48.UNW |
| pfam | MGYG000002560_12 | MGYG000002560_12_78 | 107305 | 110631 | - | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | MGYG000002560_12 | MGYG000002560_12_79 | 110667 | 111392 | - | 2.A.115.2.8 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_80 | 111448 | 112908 | - | GH140 |
| CAZyme | MGYG000002560_12 | MGYG000002560_12_81 | 112976 | 113980 | - | GH43_18 |
Gene ID: MGYG000002560_12_51
Type: CAZyme
Location: 57278 - 59005 (-)
Type: CAZyme
Location: 57278 - 59005 (-)
Gene ID: MGYG000002560_12_52
Type: CAZyme
Location: 59012 - 60151 (-)
Type: CAZyme
Location: 59012 - 60151 (-)
Gene ID: MGYG000002560_12_53
Type: CAZyme
Location: 60166 - 61779 (-)
Type: CAZyme
Location: 60166 - 61779 (-)
Gene ID: MGYG000002560_12_54
Type: pfam
Location: 61967 - 62458 (+)
Type: pfam
Location: 61967 - 62458 (+)
Gene ID: MGYG000002560_12_55
Type: CAZyme
Location: 62581 - 64581 (-)
Type: CAZyme
Location: 62581 - 64581 (-)
Gene ID: MGYG000002560_12_56
Type: CAZyme
Location: 64599 - 66983 (-)
Type: CAZyme
Location: 64599 - 66983 (-)
Gene ID: MGYG000002560_12_57
Type: CAZyme
Location: 67004 - 70033 (-)
Type: CAZyme
Location: 67004 - 70033 (-)
Gene ID: MGYG000002560_12_58
Type: TC
Location: 70121 - 71809 (-)
Type: TC
Location: 70121 - 71809 (-)
Gene ID: MGYG000002560_12_59
Type: TC
Location: 71828 - 75124 (-)
Type: TC
Location: 71828 - 75124 (-)
Gene ID: MGYG000002560_12_60
Type: STP
Location: 75180 - 76112 (-)
Type: STP
Location: 75180 - 76112 (-)
Gene ID: MGYG000002560_12_61
Type: STP
Location: 76181 - 76744 (-)
Type: STP
Location: 76181 - 76744 (-)
Gene ID: MGYG000002560_12_62
Type: CAZyme
Location: 76818 - 78371 (-)
Type: CAZyme
Location: 76818 - 78371 (-)
Gene ID: MGYG000002560_12_63
Type:
Location: 78405 - 80954 (-)
Type:
Location: 78405 - 80954 (-)
Gene ID: MGYG000002560_12_64
Type: CAZyme
Location: 81060 - 83048 (-)
Type: CAZyme
Location: 81060 - 83048 (-)
Gene ID: MGYG000002560_12_65
Type:
Location: 83980 - 84549 (-)
Type:
Location: 83980 - 84549 (-)
Gene ID: MGYG000002560_12_66
Type: pfam
Location: 84689 - 86857 (-)
Type: pfam
Location: 84689 - 86857 (-)
Gene ID: MGYG000002560_12_67
Type: TC
Location: 86870 - 90091 (-)
Type: TC
Location: 86870 - 90091 (-)
Gene ID: MGYG000002560_12_68
Type: CAZyme
Location: 90311 - 91840 (-)
Type: CAZyme
Location: 90311 - 91840 (-)
Gene ID: MGYG000002560_12_69
Type: pfam
Location: 91858 - 93483 (-)
Type: pfam
Location: 91858 - 93483 (-)
Gene ID: MGYG000002560_12_70
Type: TC
Location: 93510 - 95444 (-)
Type: TC
Location: 93510 - 95444 (-)
Gene ID: MGYG000002560_12_71
Type: TC
Location: 95466 - 98714 (-)
Type: TC
Location: 95466 - 98714 (-)
Gene ID: MGYG000002560_12_72
Type: CAZyme
Location: 98898 - 99848 (-)
Type: CAZyme
Location: 98898 - 99848 (-)
Gene ID: MGYG000002560_12_73
Type: CAZyme
Location: 99864 - 101093 (-)
Type: CAZyme
Location: 99864 - 101093 (-)
Gene ID: MGYG000002560_12_74
Type: TC
Location: 101384 - 102781 (+)
Type: TC
Location: 101384 - 102781 (+)
Gene ID: MGYG000002560_12_75
Type: pfam
Location: 102813 - 103736 (+)
Type: pfam
Location: 102813 - 103736 (+)
Gene ID: MGYG000002560_12_76
Type: TC
Location: 104127 - 105602 (+)
Type: TC
Location: 104127 - 105602 (+)
Gene ID: MGYG000002560_12_77
Type: peptidase
Location: 105700 - 107220 (-)
Type: peptidase
Location: 105700 - 107220 (-)
Gene ID: MGYG000002560_12_78
Type: pfam
Location: 107305 - 110631 (-)
Type: pfam
Location: 107305 - 110631 (-)
Gene ID: MGYG000002560_12_79
Type: TC
Location: 110667 - 111392 (-)
Type: TC
Location: 110667 - 111392 (-)
Gene ID: MGYG000002560_12_80
Type: CAZyme
Location: 111448 - 112908 (-)
Type: CAZyme
Location: 111448 - 112908 (-)
Gene ID: MGYG000002560_12_81
Type: CAZyme
Location: 112976 - 113980 (-)
Type: CAZyme
Location: 112976 - 113980 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.