Cluster: MGYG000002560_CGC40
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 11
- Substrate: pectin
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_01475
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_8 | MGYG000002560_8_104 | 139000 | 140403 | - | GH105 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_105 | 140414 | 142321 | - | PL11_1 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_106 | 142429 | 143811 | - | GH28 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_107 | 143833 | 146178 | - | GH115 |
| pfam | MGYG000002560_8 | MGYG000002560_8_108 | 146373 | 147854 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000002560_8 | MGYG000002560_8_109 | 147866 | 151192 | - | 1.B.14.6.1 |
| STP | MGYG000002560_8 | MGYG000002560_8_110 | 151423 | 152436 | - | FecR |
| STP | MGYG000002560_8 | MGYG000002560_8_111 | 152573 | 153154 | + | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_112 | 153232 | 156540 | - | PL26 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_113 | 156818 | 158467 | - | CE12 | CE12 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_114 | 158785 | 160629 | - | PL11_1 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_115 | 160714 | 163719 | - | GH2 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_116 | 164304 | 167165 | - | GH106 |
| sulfatase | MGYG000002560_8 | MGYG000002560_8_117 | 167178 | 168572 | - | S1_20 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_118 | 168590 | 170425 | - | PL11 |
| CAZyme | MGYG000002560_8 | MGYG000002560_8_119 | 170455 | 171735 | - | CE15 |
| pfam | MGYG000002560_8 | MGYG000002560_8_120 | 171740 | 173068 | - | PD40 | PD40 | Pectate_lyase22 |
| pfam | MGYG000002560_8 | MGYG000002560_8_121 | 173245 | 175587 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000002560_8 | MGYG000002560_8_122 | 175611 | 178994 | - | 1.B.14.6.1 |
Gene ID: MGYG000002560_8_104
Type: CAZyme
Location: 139000 - 140403 (-)
Type: CAZyme
Location: 139000 - 140403 (-)
Gene ID: MGYG000002560_8_105
Type: CAZyme
Location: 140414 - 142321 (-)
Type: CAZyme
Location: 140414 - 142321 (-)
Gene ID: MGYG000002560_8_106
Type: CAZyme
Location: 142429 - 143811 (-)
Type: CAZyme
Location: 142429 - 143811 (-)
Gene ID: MGYG000002560_8_107
Type: CAZyme
Location: 143833 - 146178 (-)
Type: CAZyme
Location: 143833 - 146178 (-)
Gene ID: MGYG000002560_8_108
Type: pfam
Location: 146373 - 147854 (-)
Type: pfam
Location: 146373 - 147854 (-)
Gene ID: MGYG000002560_8_109
Type: TC
Location: 147866 - 151192 (-)
Type: TC
Location: 147866 - 151192 (-)
Gene ID: MGYG000002560_8_110
Type: STP
Location: 151423 - 152436 (-)
Type: STP
Location: 151423 - 152436 (-)
Gene ID: MGYG000002560_8_111
Type: STP
Location: 152573 - 153154 (+)
Type: STP
Location: 152573 - 153154 (+)
Gene ID: MGYG000002560_8_112
Type: CAZyme
Location: 153232 - 156540 (-)
Type: CAZyme
Location: 153232 - 156540 (-)
Gene ID: MGYG000002560_8_113
Type: CAZyme
Location: 156818 - 158467 (-)
Type: CAZyme
Location: 156818 - 158467 (-)
Gene ID: MGYG000002560_8_114
Type: CAZyme
Location: 158785 - 160629 (-)
Type: CAZyme
Location: 158785 - 160629 (-)
Gene ID: MGYG000002560_8_115
Type: CAZyme
Location: 160714 - 163719 (-)
Type: CAZyme
Location: 160714 - 163719 (-)
Gene ID: MGYG000002560_8_116
Type: CAZyme
Location: 164304 - 167165 (-)
Type: CAZyme
Location: 164304 - 167165 (-)
Gene ID: MGYG000002560_8_117
Type: sulfatase
Location: 167178 - 168572 (-)
Type: sulfatase
Location: 167178 - 168572 (-)
Gene ID: MGYG000002560_8_118
Type: CAZyme
Location: 168590 - 170425 (-)
Type: CAZyme
Location: 168590 - 170425 (-)
Gene ID: MGYG000002560_8_119
Type: CAZyme
Location: 170455 - 171735 (-)
Type: CAZyme
Location: 170455 - 171735 (-)
Gene ID: MGYG000002560_8_120
Type: pfam
Location: 171740 - 173068 (-)
Type: pfam
Location: 171740 - 173068 (-)
Gene ID: MGYG000002560_8_121
Type: pfam
Location: 173245 - 175587 (-)
Type: pfam
Location: 173245 - 175587 (-)
Gene ID: MGYG000002560_8_122
Type: TC
Location: 175611 - 178994 (-)
Type: TC
Location: 175611 - 178994 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.