Cluster: MGYG000002560_CGC30
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_5 | MGYG000002560_5_25 | 23141 | 24304 | + | GT4 |
| TC | MGYG000002560_5 | MGYG000002560_5_26 | 24280 | 25155 | + | 3.A.1.103.5 |
| TC | MGYG000002560_5 | MGYG000002560_5_27 | 25164 | 26426 | + | 3.A.1.103.5 |
| NULL(UNKNOWN) | MGYG000002560_5 | MGYG000002560_5_28 | 26433 | 27269 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_29 | 27266 | 28084 | + | GT2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_30 | 28089 | 29042 | + | GT2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_31 | 29065 | 30057 | - | GT2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_32 | 30115 | 31101 | + | GT2 |
| pfam | MGYG000002560_5 | MGYG000002560_5_33 | 31106 | 31717 | - | Hexapep | Hexapep_2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_34 | 31723 | 32883 | - | GT2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_35 | 32890 | 34014 | - | GT2 |
| CAZyme | MGYG000002560_5 | MGYG000002560_5_36 | 34021 | 34920 | - | GT2 |
Gene ID: MGYG000002560_5_25
Type: CAZyme
Location: 23141 - 24304 (+)
Type: CAZyme
Location: 23141 - 24304 (+)
Gene ID: MGYG000002560_5_26
Type: TC
Location: 24280 - 25155 (+)
Type: TC
Location: 24280 - 25155 (+)
Gene ID: MGYG000002560_5_27
Type: TC
Location: 25164 - 26426 (+)
Type: TC
Location: 25164 - 26426 (+)
Gene ID: MGYG000002560_5_28
Type:
Location: 26433 - 27269 (+)
Type:
Location: 26433 - 27269 (+)
Gene ID: MGYG000002560_5_29
Type: CAZyme
Location: 27266 - 28084 (+)
Type: CAZyme
Location: 27266 - 28084 (+)
Gene ID: MGYG000002560_5_30
Type: CAZyme
Location: 28089 - 29042 (+)
Type: CAZyme
Location: 28089 - 29042 (+)
Gene ID: MGYG000002560_5_31
Type: CAZyme
Location: 29065 - 30057 (-)
Type: CAZyme
Location: 29065 - 30057 (-)
Gene ID: MGYG000002560_5_32
Type: CAZyme
Location: 30115 - 31101 (+)
Type: CAZyme
Location: 30115 - 31101 (+)
Gene ID: MGYG000002560_5_33
Type: pfam
Location: 31106 - 31717 (-)
Type: pfam
Location: 31106 - 31717 (-)
Gene ID: MGYG000002560_5_34
Type: CAZyme
Location: 31723 - 32883 (-)
Type: CAZyme
Location: 31723 - 32883 (-)
Gene ID: MGYG000002560_5_35
Type: CAZyme
Location: 32890 - 34014 (-)
Type: CAZyme
Location: 32890 - 34014 (-)
Gene ID: MGYG000002560_5_36
Type: CAZyme
Location: 34021 - 34920 (-)
Type: CAZyme
Location: 34021 - 34920 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.