Cluster: MGYG000002560_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate: pectin
- Genome ID: MGYG000002560
- CGC Family ID: CGCFAM_00079
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000002560_2 | MGYG000002560_2_110 | 151948 | 152559 | + | CE4 |
| CAZyme | MGYG000002560_2 | MGYG000002560_2_111 | 152580 | 153950 | - | GH144 |
| CAZyme | MGYG000002560_2 | MGYG000002560_2_112 | 153969 | 156302 | - | GH3 |
| TC | MGYG000002560_2 | MGYG000002560_2_113 | 156505 | 158028 | - | 8.A.46.1.3 |
| TC | MGYG000002560_2 | MGYG000002560_2_114 | 158035 | 161091 | - | 1.B.14.6.1 |
Gene ID: MGYG000002560_2_110
Type: CAZyme
Location: 151948 - 152559 (+)
Type: CAZyme
Location: 151948 - 152559 (+)
Gene ID: MGYG000002560_2_111
Type: CAZyme
Location: 152580 - 153950 (-)
Type: CAZyme
Location: 152580 - 153950 (-)
Gene ID: MGYG000002560_2_112
Type: CAZyme
Location: 153969 - 156302 (-)
Type: CAZyme
Location: 153969 - 156302 (-)
Gene ID: MGYG000002560_2_113
Type: TC
Location: 156505 - 158028 (-)
Type: TC
Location: 156505 - 158028 (-)
Gene ID: MGYG000002560_2_114
Type: TC
Location: 158035 - 161091 (-)
Type: TC
Location: 158035 - 161091 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp902388365
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.