Cluster: MGYG000001279_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001279
- CGC Family ID: CGCFAM_00003
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001279_186 | MGYG000001279_186_3 | 2289 | 3431 | + | GT4 |
| CAZyme | MGYG000001279_186 | MGYG000001279_186_4 | 3428 | 4537 | + | GT4 |
| pfam | MGYG000001279_186 | MGYG000001279_186_5 | 4613 | 5584 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd |
| TC | MGYG000001279_186 | MGYG000001279_186_6 | 5581 | 6585 | + | 9.B.146.1.2 |
| TC | MGYG000001279_186 | MGYG000001279_186_7 | 6688 | 8352 | + | 9.B.18.2.1 |
Gene ID: MGYG000001279_186_3
Type: CAZyme
Location: 2289 - 3431 (+)
Type: CAZyme
Location: 2289 - 3431 (+)
Gene ID: MGYG000001279_186_4
Type: CAZyme
Location: 3428 - 4537 (+)
Type: CAZyme
Location: 3428 - 4537 (+)
Gene ID: MGYG000001279_186_5
Type: pfam
Location: 4613 - 5584 (+)
Type: pfam
Location: 4613 - 5584 (+)
Gene ID: MGYG000001279_186_6
Type: TC
Location: 5581 - 6585 (+)
Type: TC
Location: 5581 - 6585 (+)
Gene ID: MGYG000001279_186_7
Type: TC
Location: 6688 - 8352 (+)
Type: TC
Location: 6688 - 8352 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fulva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.