Cluster: MGYG000001279_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000001279
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001279_182 | MGYG000001279_182_3 | 1227 | 3050 | - | GH3 |
| pfam | MGYG000001279_182 | MGYG000001279_182_4 | 3047 | 3523 | - | Glyco_hydro_3 |
| TC | MGYG000001279_182 | MGYG000001279_182_5 | 3679 | 5556 | + | 2.A.1.42.2 |
| TC | MGYG000001279_182 | MGYG000001279_182_6 | 5581 | 5898 | - | 2.A.7.1.10 |
| TC | MGYG000001279_182 | MGYG000001279_182_7 | 6032 | 6997 | - | 2.A.28.2.4 |
Gene ID: MGYG000001279_182_3
Type: CAZyme
Location: 1227 - 3050 (-)
Type: CAZyme
Location: 1227 - 3050 (-)
Gene ID: MGYG000001279_182_4
Type: pfam
Location: 3047 - 3523 (-)
Type: pfam
Location: 3047 - 3523 (-)
Gene ID: MGYG000001279_182_5
Type: TC
Location: 3679 - 5556 (+)
Type: TC
Location: 3679 - 5556 (+)
Gene ID: MGYG000001279_182_6
Type: TC
Location: 5581 - 5898 (-)
Type: TC
Location: 5581 - 5898 (-)
Gene ID: MGYG000001279_182_7
Type: TC
Location: 6032 - 6997 (-)
Type: TC
Location: 6032 - 6997 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fulva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.