Cluster: MGYG000001279_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000001279
- CGC Family ID: CGCFAM_00281
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000001279_147 | MGYG000001279_147_1 | 2 | 904 | - | GT2 |
| pfam | MGYG000001279_147 | MGYG000001279_147_2 | 904 | 2541 | - | DUF6311 |
| CAZyme | MGYG000001279_147 | MGYG000001279_147_3 | 2575 | 5100 | - | GT4 | GT4 |
| pfam | MGYG000001279_147 | MGYG000001279_147_4 | 5100 | 6488 | - | MetW | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 |
| TC | MGYG000001279_147 | MGYG000001279_147_5 | 6481 | 7701 | - | 3.A.1.103.6 |
| TC | MGYG000001279_147 | MGYG000001279_147_6 | 7698 | 8492 | - | 3.A.1.103.6 |
Gene ID: MGYG000001279_147_1
Type: CAZyme
Location: 2 - 904 (-)
Type: CAZyme
Location: 2 - 904 (-)
Gene ID: MGYG000001279_147_2
Type: pfam
Location: 904 - 2541 (-)
Type: pfam
Location: 904 - 2541 (-)
Gene ID: MGYG000001279_147_3
Type: CAZyme
Location: 2575 - 5100 (-)
Type: CAZyme
Location: 2575 - 5100 (-)
Gene ID: MGYG000001279_147_4
Type: pfam
Location: 5100 - 6488 (-)
Type: pfam
Location: 5100 - 6488 (-)
Gene ID: MGYG000001279_147_5
Type: TC
Location: 6481 - 7701 (-)
Type: TC
Location: 6481 - 7701 (-)
Gene ID: MGYG000001279_147_6
Type: TC
Location: 7698 - 8492 (-)
Type: TC
Location: 7698 - 8492 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas_E
Species
Pseudomonas_E fulva
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.