Cluster: MGYG000000964_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000000964
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000964_2 | MGYG000000964_2_43 | 46340 | 47548 | + | 1.A.23.4.5 |
| TF | MGYG000000964_2 | MGYG000000964_2_44 | 47700 | 51578 | + | HTH_AraC |
| CAZyme | MGYG000000964_2 | MGYG000000964_2_45 | 51789 | 54227 | + | GH2 |
| pfam | MGYG000000964_2 | MGYG000000964_2_46 | 54516 | 54884 | + | FlK |
| CAZyme | MGYG000000964_2 | MGYG000000964_2_47 | 55144 | 57246 | - | CE8 | GH105 |
| TC | MGYG000000964_2 | MGYG000000964_2_48 | 57504 | 58877 | + | 4.A.5.1.2 |
| pfam | MGYG000000964_2 | MGYG000000964_2_49 | 58921 | 59877 | + | KduI |
| TC | MGYG000000964_2 | MGYG000000964_2_50 | 59920 | 61386 | + | 2.A.1.14.25 |
| TC | MGYG000000964_2 | MGYG000000964_2_51 | 61865 | 65125 | + | 1.B.14.6.1 |
| pfam | MGYG000000964_2 | MGYG000000964_2_52 | 65145 | 67259 | + | SusD_RagB | SusD-like_3 |
| CAZyme | MGYG000000964_2 | MGYG000000964_2_53 | 67460 | 68761 | - | CE7 |
| pfam | MGYG000000964_2 | MGYG000000964_2_54 | 68874 | 69845 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | MGYG000000964_2 | MGYG000000964_2_55 | 69986 | 71536 | - | GH109 |
Gene ID: MGYG000000964_2_43
Type: TC
Location: 46340 - 47548 (+)
Type: TC
Location: 46340 - 47548 (+)
Gene ID: MGYG000000964_2_44
Type: TF
Location: 47700 - 51578 (+)
Type: TF
Location: 47700 - 51578 (+)
Gene ID: MGYG000000964_2_45
Type: CAZyme
Location: 51789 - 54227 (+)
Type: CAZyme
Location: 51789 - 54227 (+)
Gene ID: MGYG000000964_2_46
Type: pfam
Location: 54516 - 54884 (+)
Type: pfam
Location: 54516 - 54884 (+)
Gene ID: MGYG000000964_2_47
Type: CAZyme
Location: 55144 - 57246 (-)
Type: CAZyme
Location: 55144 - 57246 (-)
Gene ID: MGYG000000964_2_48
Type: TC
Location: 57504 - 58877 (+)
Type: TC
Location: 57504 - 58877 (+)
Gene ID: MGYG000000964_2_49
Type: pfam
Location: 58921 - 59877 (+)
Type: pfam
Location: 58921 - 59877 (+)
Gene ID: MGYG000000964_2_50
Type: TC
Location: 59920 - 61386 (+)
Type: TC
Location: 59920 - 61386 (+)
Gene ID: MGYG000000964_2_51
Type: TC
Location: 61865 - 65125 (+)
Type: TC
Location: 61865 - 65125 (+)
Gene ID: MGYG000000964_2_52
Type: pfam
Location: 65145 - 67259 (+)
Type: pfam
Location: 65145 - 67259 (+)
Gene ID: MGYG000000964_2_53
Type: CAZyme
Location: 67460 - 68761 (-)
Type: CAZyme
Location: 67460 - 68761 (-)
Gene ID: MGYG000000964_2_54
Type: pfam
Location: 68874 - 69845 (-)
Type: pfam
Location: 68874 - 69845 (-)
Gene ID: MGYG000000964_2_55
Type: CAZyme
Location: 69986 - 71536 (-)
Type: CAZyme
Location: 69986 - 71536 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola salanitronis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.