Cluster: MGYG000000303_CGC7
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000000303
- CGC Family ID: CGCFAM_02705
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000303_3 | MGYG000000303_3_59 | 83142 | 84026 | + | 9.B.1.1.5 |
| pfam | MGYG000000303_3 | MGYG000000303_3_60 | 84073 | 85020 | + | Aldose_epim | Aldose_epim |
| pfam | MGYG000000303_3 | MGYG000000303_3_61 | 85186 | 87993 | - | FtsX | FtsX |
| TC | MGYG000000303_3 | MGYG000000303_3_62 | 87994 | 88743 | - | 3.A.1.125.3 |
| NULL(UNKNOWN) | MGYG000000303_3 | MGYG000000303_3_63 | 88810 | 90351 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000303_3 | MGYG000000303_3_64 | 90352 | 91050 | - | 3.A.1.122.2 |
| pfam | MGYG000000303_3 | MGYG000000303_3_65 | 91183 | 92589 | + | HisKA_3 |
| TF | MGYG000000303_3 | MGYG000000303_3_66 | 92570 | 93256 | + | GerE |
| CAZyme | MGYG000000303_3 | MGYG000000303_3_67 | 93324 | 94505 | - | CE9 |
| pfam | MGYG000000303_3 | MGYG000000303_3_68 | 94757 | 95560 | + | NTP_transferase | NTP_transf_3 |
| TC | MGYG000000303_3 | MGYG000000303_3_69 | 95749 | 97038 | + | 3.A.1.1.48 |
| TC | MGYG000000303_3 | MGYG000000303_3_70 | 97283 | 98290 | + | 3.A.1.1.48 |
| TC | MGYG000000303_3 | MGYG000000303_3_71 | 98283 | 99215 | + | 3.A.1.1.48 |
| peptidase | MGYG000000303_3 | MGYG000000303_3_72 | 99537 | 100868 | + | U32.UPW |
| pfam | MGYG000000303_3 | MGYG000000303_3_73 | 101086 | 102612 | - | FGGY_N | FGGY_C |
| TC | MGYG000000303_3 | MGYG000000303_3_74 | 102672 | 103493 | - | 1.A.8.2.1 |
| STP | MGYG000000303_3 | MGYG000000303_3_75 | 103682 | 104683 | + | Sigma70_r4 |
| pfam | MGYG000000303_3 | MGYG000000303_3_76 | 104693 | 105964 | + | FAD_binding_4 | MurB_C |
| TC | MGYG000000303_3 | MGYG000000303_3_77 | 106050 | 107399 | - | 2.A.1.52.3 |
| pfam | MGYG000000303_3 | MGYG000000303_3_78 | 107523 | 108260 | - | GDPD |
| CAZyme | MGYG000000303_3 | MGYG000000303_3_79 | 108487 | 110649 | - | GH112 |
Gene ID: MGYG000000303_3_59
Type: TC
Location: 83142 - 84026 (+)
Type: TC
Location: 83142 - 84026 (+)
Gene ID: MGYG000000303_3_60
Type: pfam
Location: 84073 - 85020 (+)
Type: pfam
Location: 84073 - 85020 (+)
Gene ID: MGYG000000303_3_61
Type: pfam
Location: 85186 - 87993 (-)
Type: pfam
Location: 85186 - 87993 (-)
Gene ID: MGYG000000303_3_62
Type: TC
Location: 87994 - 88743 (-)
Type: TC
Location: 87994 - 88743 (-)
Gene ID: MGYG000000303_3_63
Type:
Location: 88810 - 90351 (-)
Type:
Location: 88810 - 90351 (-)
Gene ID: MGYG000000303_3_64
Type: TC
Location: 90352 - 91050 (-)
Type: TC
Location: 90352 - 91050 (-)
Gene ID: MGYG000000303_3_65
Type: pfam
Location: 91183 - 92589 (+)
Type: pfam
Location: 91183 - 92589 (+)
Gene ID: MGYG000000303_3_66
Type: TF
Location: 92570 - 93256 (+)
Type: TF
Location: 92570 - 93256 (+)
Gene ID: MGYG000000303_3_67
Type: CAZyme
Location: 93324 - 94505 (-)
Type: CAZyme
Location: 93324 - 94505 (-)
Gene ID: MGYG000000303_3_68
Type: pfam
Location: 94757 - 95560 (+)
Type: pfam
Location: 94757 - 95560 (+)
Gene ID: MGYG000000303_3_69
Type: TC
Location: 95749 - 97038 (+)
Type: TC
Location: 95749 - 97038 (+)
Gene ID: MGYG000000303_3_70
Type: TC
Location: 97283 - 98290 (+)
Type: TC
Location: 97283 - 98290 (+)
Gene ID: MGYG000000303_3_71
Type: TC
Location: 98283 - 99215 (+)
Type: TC
Location: 98283 - 99215 (+)
Gene ID: MGYG000000303_3_72
Type: peptidase
Location: 99537 - 100868 (+)
Type: peptidase
Location: 99537 - 100868 (+)
Gene ID: MGYG000000303_3_73
Type: pfam
Location: 101086 - 102612 (-)
Type: pfam
Location: 101086 - 102612 (-)
Gene ID: MGYG000000303_3_74
Type: TC
Location: 102672 - 103493 (-)
Type: TC
Location: 102672 - 103493 (-)
Gene ID: MGYG000000303_3_75
Type: STP
Location: 103682 - 104683 (+)
Type: STP
Location: 103682 - 104683 (+)
Gene ID: MGYG000000303_3_76
Type: pfam
Location: 104693 - 105964 (+)
Type: pfam
Location: 104693 - 105964 (+)
Gene ID: MGYG000000303_3_77
Type: TC
Location: 106050 - 107399 (-)
Type: TC
Location: 106050 - 107399 (-)
Gene ID: MGYG000000303_3_78
Type: pfam
Location: 107523 - 108260 (-)
Type: pfam
Location: 107523 - 108260 (-)
Gene ID: MGYG000000303_3_79
Type: CAZyme
Location: 108487 - 110649 (-)
Type: CAZyme
Location: 108487 - 110649 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.