Cluster: MGYG000000303_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000303
- CGC Family ID: CGCFAM_03615
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000303_3 | MGYG000000303_3_5 | 3249 | 4784 | + | 3.A.1.2.19 |
| TC | MGYG000000303_3 | MGYG000000303_3_6 | 4777 | 5739 | + | 3.A.1.2.15 |
| CAZyme | MGYG000000303_3 | MGYG000000303_3_7 | 5796 | 7847 | + | GH35 |
| NULL(UNKNOWN) | MGYG000000303_3 | MGYG000000303_3_8 | 7859 | 8638 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000000303_3 | MGYG000000303_3_9 | 8799 | 9842 | - | LacI |
| TC | MGYG000000303_3 | MGYG000000303_3_10 | 10013 | 12082 | + | 2.A.15.1.4 |
| NULL(UNKNOWN) | MGYG000000303_3 | MGYG000000303_3_11 | 12275 | 12643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000000303_3 | MGYG000000303_3_12 | 12690 | 14942 | - | 3.A.3.5.31 |
| TC | MGYG000000303_3 | MGYG000000303_3_13 | 15294 | 17741 | - | 4.A.2.1.17 |
| pfam | MGYG000000303_3 | MGYG000000303_3_14 | 17763 | 18374 | - | Dak2 |
| pfam | MGYG000000303_3 | MGYG000000303_3_15 | 18377 | 19378 | - | Dak1 |
| TC | MGYG000000303_3 | MGYG000000303_3_16 | 19499 | 20911 | - | 2.A.1.24.5 |
Gene ID: MGYG000000303_3_5
Type: TC
Location: 3249 - 4784 (+)
Type: TC
Location: 3249 - 4784 (+)
Gene ID: MGYG000000303_3_6
Type: TC
Location: 4777 - 5739 (+)
Type: TC
Location: 4777 - 5739 (+)
Gene ID: MGYG000000303_3_7
Type: CAZyme
Location: 5796 - 7847 (+)
Type: CAZyme
Location: 5796 - 7847 (+)
Gene ID: MGYG000000303_3_8
Type:
Location: 7859 - 8638 (+)
Type:
Location: 7859 - 8638 (+)
Gene ID: MGYG000000303_3_9
Type: TF
Location: 8799 - 9842 (-)
Type: TF
Location: 8799 - 9842 (-)
Gene ID: MGYG000000303_3_10
Type: TC
Location: 10013 - 12082 (+)
Type: TC
Location: 10013 - 12082 (+)
Gene ID: MGYG000000303_3_11
Type:
Location: 12275 - 12643 (+)
Type:
Location: 12275 - 12643 (+)
Gene ID: MGYG000000303_3_12
Type: TC
Location: 12690 - 14942 (-)
Type: TC
Location: 12690 - 14942 (-)
Gene ID: MGYG000000303_3_13
Type: TC
Location: 15294 - 17741 (-)
Type: TC
Location: 15294 - 17741 (-)
Gene ID: MGYG000000303_3_14
Type: pfam
Location: 17763 - 18374 (-)
Type: pfam
Location: 17763 - 18374 (-)
Gene ID: MGYG000000303_3_15
Type: pfam
Location: 18377 - 19378 (-)
Type: pfam
Location: 18377 - 19378 (-)
Gene ID: MGYG000000303_3_16
Type: TC
Location: 19499 - 20911 (-)
Type: TC
Location: 19499 - 20911 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.