Cluster: MGYG000000303_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000000303
- CGC Family ID: CGCFAM_01719
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000000303_2 | MGYG000000303_2_75 | 90455 | 91162 | + | 2.A.77.1.1 |
| pfam | MGYG000000303_2 | MGYG000000303_2_76 | 91354 | 92502 | - | ABC2_membrane | ABC2_membrane_3 |
| pfam | MGYG000000303_2 | MGYG000000303_2_77 | 92489 | 93748 | - | ABC2_membrane_3 |
| TC | MGYG000000303_2 | MGYG000000303_2_78 | 93751 | 94689 | - | 3.A.1.105.7 |
| pfam | MGYG000000303_2 | MGYG000000303_2_79 | 94908 | 95393 | + | tRNA_edit |
| TC | MGYG000000303_2 | MGYG000000303_2_80 | 95572 | 96837 | + | 2.A.55.3.3 |
| CAZyme | MGYG000000303_2 | MGYG000000303_2_81 | 97007 | 99190 | - | CBM48 | GH13_9 |
Gene ID: MGYG000000303_2_75
Type: TC
Location: 90455 - 91162 (+)
Type: TC
Location: 90455 - 91162 (+)
Gene ID: MGYG000000303_2_76
Type: pfam
Location: 91354 - 92502 (-)
Type: pfam
Location: 91354 - 92502 (-)
Gene ID: MGYG000000303_2_77
Type: pfam
Location: 92489 - 93748 (-)
Type: pfam
Location: 92489 - 93748 (-)
Gene ID: MGYG000000303_2_78
Type: TC
Location: 93751 - 94689 (-)
Type: TC
Location: 93751 - 94689 (-)
Gene ID: MGYG000000303_2_79
Type: pfam
Location: 94908 - 95393 (+)
Type: pfam
Location: 94908 - 95393 (+)
Gene ID: MGYG000000303_2_80
Type: TC
Location: 95572 - 96837 (+)
Type: TC
Location: 95572 - 96837 (+)
Gene ID: MGYG000000303_2_81
Type: CAZyme
Location: 97007 - 99190 (-)
Type: CAZyme
Location: 97007 - 99190 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Varibaculum
Species
Varibaculum cambriense_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.